Contig 012416:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043C07Sequence633007986 (4)ref|XP_009803270.1|1e-42PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]638012416 (3)ref|XP_009803270.1|4e-41PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]
JMFF046O13Sequence647007986 (4)ref|XP_009803270.1|2e-48PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]592012416 (3)ref|XP_009803270.1|2e-42PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]
JMSF037I08Sequence683007986 (4)ref|XP_009803270.1|3e-22PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]724012416 (3)ref|XP_009803270.1|5e-74PREDICTED: scarecrow-like protein 15 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF037I08+                                              TCAAAGCTATCAAGTTCATAGACG
                      ____________________________________________________________
consensus                                                 TCAAAGCTATCAAGTTCATAGACG
 
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rJMSF037I08+          GAGAAAAGATCGTCGTGTTGTTATCTCCGGCAATTTTCCGGCGGGTCGGGTCGGGGCAGT
                      ____________________________________________________________
consensus             GAGAAAAGATCGTCGTGTTGTTATCTCCGGCAATTTTCCGGCGGGTCGGGTCGGGGCAGT
 
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rJMSF037I08+          TCGCCGCCGATCTCCGTCGGGTGTCTCCGCACGTGGTGGTGCACGTGGACAGTGAAGGGG
                      ____________________________________________________________
consensus             TCGCCGCCGATCTCCGTCGGGTGTCTCCGCACGTGGTGGTGCACGTGGACAGTGAAGGGG
 
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rJMSF037I08+          TGGTGGGGCCCGGACCTTCGTCTTTCCGGCAGACGGTGATTGAAGGGCTGGAGTTTTACT
rJMFF046O13+                                     GGCAGACGGTGATTGAAGGGCTGGAGTTNTACT
                      ____________________________________________________________
consensus             TGGTGGGGCCCGGACCTTCGTCTTTCCGGCAGACGGTGATTGAAGGGCTGGAGTTTTACT
 
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rJMSF037I08+          CCGGCCTCTTGGAGTCTCTGGAGGCGGCGAACGTCGGCGGAGATTGGATTAAGAAGATTG
rJMFF046O13+          CCGGCCTCTTGGAGTCTCTGGAGGCGGCGAACGTCGGCGGAGATTGGATTAAGAAGATTG
rJMFF043C07+                                GGCGGCGAACGTCGGCGGAGATTGGATTAAGAAGATTG
                      ____________________________________________________________
consensus             CCGGCCTCTTGGAGTCTCTGGAGGCGGCGAACGTCGGCGGAGATTGGATTAAGAAGATTG
 
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rJMSF037I08+          AGAATTTCGTGTTGTTTCCGAAGATTGTGGAGACGGTTGGGGCTGCCGGCGGCCGCGGGA
rJMFF046O13+          AGAATTTCGTGTTGTTTCCGAAGATTGTGGAGACGGTTGGGGCTGCCGGCGGCCGCGGGA
rJMFF043C07+          AGAATTTCGTGTTGTTTCCGAAGATTGTGGAGACGGTTGGGGCTGCCGGCGGCCGCGGGA
                      ____________________________________________________________
consensus             AGAATTTCGTGTTGTTTCCGAAGATTGTGGAGACGGTTGGGGCTGCCGGCGGCCGCGGGA
 
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rJMSF037I08+          TGACGTGGAAGGAGGCTTTTGTGGCGGCCGGGTTTCGGCCGGTGGGTTTGAGTCAATTTG
rJMFF046O13+          TGACGTGGAAGGAGGCTTTTGTGGCGGCCGGGTTTCGGCCGGTGGGTTTGAGTCAATTTG
rJMFF043C07+          TGACGTGGAAGGAGGCTTTTGTGGCGGCCGGGTTTCGGCCGGTGGGTTTGAGTCAATTTG
                      ____________________________________________________________
consensus             TGACGTGGAAGGAGGCTTTTGTGGCGGCCGGGTTTCGGCCGGTGGGTTTGAGTCAATTTG
 
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rJMSF037I08+          CTGACTTTCAGGCTAACTTATTGCTCGGAAAGGTGCAGATTGGAGGGTTCCACGTGGCAA
rJMFF046O13+          CTGACTTTCAGGCTAACTTATTGCTCGGAAAGGTGCAGATTGGAGGGTTCCACGTGGCAA
rJMFF043C07+          CTGACTTTCAGGCTAACTTATTGCTCGGAAAGGTGCAGATTGGAGGGTTCCACGTGGCAA
                      ____________________________________________________________
consensus             CTGACTTTCAGGCTAACTTATTGCTCGGAAAGGTGCAGATTGGAGGGTTCCACGTGGCAA
 
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rJMSF037I08+          AGAGACACGCCGAGATGTTGCTCTGTTGGCATGATAGGGCCCTCGTCGCCACGTCAGCTT
rJMFF046O13+          AGAGACACGCCGAGATGTTGCTCTGTTGGCATGATAGGGCCCTCGTCGCCACGTCAGCTT
rJMFF043C07+          AGAGACACGCCGAGATGTTGCTCTGTTGGCATGATAGGGCCCTCGTCGCCACGTCAGCTT
                      ____________________________________________________________
consensus             AGAGACACGCCGAGATGTTGCTCTGTTGGCATGATAGGGCCCTCGTCGCCACGTCAGCTT
 
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rJMSF037I08+          GGAGGTGATGATTTATATATCCTTGTACACAACATACATTCCTATCCTAGGTTAGGGCTC
rJMFF046O13+          GGAGGTGATGATTTATATATCCTTGTACACAACATACATTCCTATCCTAGGTTAGGGCTC
rJMFF043C07+          GGAGGTGATGATTTATATATCCTTGTACACAACATACATTCCTATCCTAGGTTAGGGCTC
                      ____________________________________________________________
consensus             GGAGGTGATGATTTATATATCCTTGTACACAACATACATTCCTATCCTAGGTTAGGGCTC
 
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rJMSF037I08+          AGCTCGGTGGAGATGATAATGAAGATAACATATGCAACCTAATCACAATATCCTTTTTAA
rJMFF046O13+          AGCTCGGTGGAGATGATAATGAAGATAACATATGCAACCTAATCACAATATCCTTTTTAA
rJMFF043C07+          AGCTCGGTGGAGATGATAATGAAGATAACATATGCAACCTAATCACAATATCCTTTTTAA
                      ____________________________________________________________
consensus             AGCTCGGTGGAGATGATAATGAAGATAACATATGCAACCTAATCACAATATCCTTTTTAA
 
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rJMSF037I08+          TTTAAGGGTTTGTCCTTTGTAATTTGTAGCTTAAGCTTGGTTTTAATTACCTCAAACTTG
rJMFF046O13+          TTTAAGGGTTTGTCCTTTGTAATTTGTAGCTTAAGCTTGGTTTTAATTACCTCAAACTTG
rJMFF043C07+          TTTAAGGGTTTGTCCTTTGTAATTTGTAGCTTAAGCTTGGTTTTAATTACCTCAAACTTG
                      ____________________________________________________________
consensus             TTTAAGGGTTTGTCCTTTGTAATTTGTAGCTTAAGCTTGGTTTTAATTACCTCAAACTTG
 
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rJMSF037I08+          GTGTTAATTGAATATCTTTATATTTTCTGATTAAGGATT                     
rJMFF046O13+          GTGTTAATTGAATATCTTTATATTTTCTGATTAAGGATTTGTTTTTAAATGTCCAA    
rJMFF043C07+          GTGTTAATTGAATATCTTTATATTTTCTGATTAAGGATTTGTTTTTAAATGTCCAATCAA
                      ____________________________________________________________
consensus             GTGTTAATTGAATATCTTTATATTTTCTGATTAAGGATTTGTTTTTAAATGTCCAATCAA
 
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rJMFF043C07+          AAACTTCTCGTAAATTAATTCATACGTCCAAGGGTCCATTGTATATGTAATTATGTATCA
                      ____________________________________________________________
consensus             AAACTTCTCGTAAATTAATTCATACGTCCAAGGGTCCATTGTATATGTAATTATGTATCA
 
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rJMFF043C07+          AGGTCTATTTTGTTACGTGAAAAAAAAAAAAAAAACTCTCCAGGTGGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AGGTCTATTTTGTTACGTGAAAAAAAAAAAAAAAACTCTCCAGGTGGATCCGCCATAAGG