clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF042I21 | Sequence | 656 | 021702 | ref|XP_009792271.1| | 4e-107 | PREDICTED: protoporphyrinogen oxidase, mitochondrial [Nicotiana sylvestris] ref | 620 | 012409 (2) | ref|XP_008231151.1| | 2e-100 | PREDICTED: protoporphyrinogen oxidase, mitochondrial [Prunus mume] |
JMSF005M18 | Sequence | 301 | 012409 (2) | ref|XP_008231151.1| | 1e-07 | PREDICTED: protoporphyrinogen oxidase, mitochondrial [Prunus mume] | 193 | 020286 |
This contig is upended
. : . : . : . : . : . :
rJMFF042I21- GGATACAAAAGTAATAGCAT
____________________________________________________________
consensus GGATACAAAAGTAATAGCAT
. : . : . : . : . : . :
rJMFF042I21- TTGAATATTTCAAGAAAAGAATACAAACACACTATAAAATAGGAACATGAAAGGCACCTT
____________________________________________________________
consensus TTGAATATTTCAAGAAAAGAATACAAACACACTATAAAATAGGAACATGAAAGGCACCTT
. : . : . : . : . : . :
rJMFF042I21- ATCTACTGCATTCATTGGTGATTTGAAGGCTCAACTGATGAAGATTCCAAATATGAGATT
____________________________________________________________
consensus ATCTACTGCATTCATTGGTGATTTGAAGGCTCAACTGATGAAGATTCCAAATATGAGATT
. : . : . : . : . : . :
rJMFF042I21- ACAAGATCAGCTGCACTGCAACCAGATGAAATTGCTTTGCCTACAGATAGTCCTCCTTTA
____________________________________________________________
consensus ACAAGATCAGCTGCACTGCAACCAGATGAAATTGCTTTGCCTACAGATAGTCCTCCTTTA
. : . : . : . : . : . :
JMSF005M18+ TTCTTCTCCATGTTTTCAACTGCTTCCAGG
rJMFF042I21- TGGTTACCTGCATAGAAAAATCCAGGGAGGTTCTTCTCCATGTTTTCAACTGCTTCCAGG
____________________________________________________________
consensus TGGTTACCTGCATAGAAAAATCCAGGGAGGTTCTTCTCCATGTTTTCAACTGCTTCCAGG
. : . : . : . : . : . :
JMSF005M18+ ACTGAATCATAGTCAAGACCATATAAAGGAAATGCTTTACTCCAGTAGACATGG
rJMFF042I21- ACTGAATCATAGTTACGACCATATAAAGGAAATGCTTTACTCCAGTAGACATGGTTCACA
____________________________________________________________
consensus ACTGAATCATAGTTACGACCATATAAAGGAAATGCTTTACTCCAGTAGACATGGTTCACA
. : . : . : . : . : . :
rJMFF042I21- AACTGTGGCTCTCCCTCTACACCCAGCAACTGCTTAAGGTCAGACGTCACAATTTGCTTC
____________________________________________________________
consensus AACTGTGGCTCTCCCTCTACACCCAGCAACTGCTTAAGGTCAGACGTCACAATTTGCTTC
. : . : . : . : . : . :
rJMFF042I21- AGCTCATCCCTTGAAGCTTTTGCAAGTTCTCTATTTCGACTTCCACCGACAAAAGTAGTG
____________________________________________________________
consensus AGCTCATCCCTTGAAGCTTTTGCAAGTTCTCTATTTCGACTTCCACCGACAAAAGTAGTG
. : . : . : . : . : . :
rJMFF042I21- TAAAGATAAACATTACTTGGTGCTCGATCTGGAAACATCGTTGAAGAGAAAAGAGTTCCT
____________________________________________________________
consensus TAAAGATAAACATTACTTGGTGCTCGATCTGGAAACATCGTTGAAGAGAAAAGAGTTCCT
. : . : . : . : . : . :
rJMFF042I21- AGTGTCTTCAAACCATTTTGTTCCTCTTTAGATGGTACAAGAACTCCAAACCCCTCAAGT
____________________________________________________________
consensus AGTGTCTTCAAACCATTTTGTTCCTCTTTAGATGGTACAAGAACTCCAAACCCCTCAAGT
. : . : . : . : . : . :
rJMFF042I21- GGCCGCTTTACATTTTCTTTTTTGAATGTTGTGATCATGACAGAGACAGGAACATAACTG
____________________________________________________________
consensus GGCCGCTTTACATTTTCTTTTTTGAATGTTGTGATCATGACAGAGACAGGAACATAACTG