Contig 012401:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026C24Sequence520011639 (7)emb|CDP17136.1|9e-54unnamed protein product [Coffea canephora]707012401 (6)ref|XP_009591644.1|2e-83PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis]
JMFF041J14Sequence646011639 (7)emb|CDP17136.1|7e-52unnamed protein product [Coffea canephora]597012401 (6)ref|XP_009591644.1|6e-42PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis]
JMFF042C04Sequence649011639 (7)emb|CDP17136.1|2e-54unnamed protein product [Coffea canephora]589012401 (6)ref|XP_009591644.1|7e-52PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis]
JMFF048B23Sequence411011639 (7)emb|CDP17136.1|2e-38unnamed protein product [Coffea canephora]335012401 (6)
JMFF050J17Sequence630011639 (7)emb|CDP17136.1|5e-55unnamed protein product [Coffea canephora]554012401 (6)ref|XP_009591644.1|5e-43PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis]
JMFS118D03Sequence505012401 (6)ref|XP_009591644.1|5e-22PREDICTED: phytochrome A-associated F-box protein [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF026C24+ GAAG
                      ____________________________________________________________
consensus GAAG
 
. : . : . : . : . : . :
rJMFF026C24+ AAAAATCGCCAGATCTTGTTCTCATCTGGCGACTGGTCCGTGGAATTTGAGTCGCGAGCA
                      ____________________________________________________________
consensus AAAAATCGCCAGATCTTGTTCTCATCTGGCGACTGGTCCGTGGAATTTGAGTCGCGAGCA
 
. : . : . : . : . : . :
rJMFF026C24+ GGGGATTAAGCTTCTGGCGAGCCGATTCAGAGAGGATTGTCTGTACATCTGCGATTGGCC
                      ____________________________________________________________
consensus GGGGATTAAGCTTCTGGCGAGCCGATTCAGAGAGGATTGTCTGTACATCTGCGATTGGCC
 
. : . : . : . : . : . :
rJMFF026C24+ GGGGTGCCTTCATCTGGAGCAGAAGCGAAACTACATGCTTTTCCGAGGAATCTTCAAGAA
rJMFF042C04+ GAAACTACATGCTTTTCCGAGGAATCTTCAAGAA
                      ____________________________________________________________
consensus GGGGTGCCTTCATCTGGAGCAGAAGCGAAACTACATGCTTTTCCGAGGAATCTTCAAGAA
 
. : . : . : . : . : . :
rJMFF026C24+ TTTCAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
rJMFF042C04+ TTTCAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
rJMFF050J17+ CAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
rJMFF041J14+ CAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
                      ____________________________________________________________
consensus TTTCAAGCAGTCAAGGGTGTGGAGGACAATCAACGATGGGAACAGGAAAAAGATAGATCT
 
. : . : . : . : . : . :
rJMFF026C24+ GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
rJMFF042C04+ GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
rJMFF050J17+ GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
JMFS118D03- AGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
rJMFF041J14+ GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
                      ____________________________________________________________
consensus GAATTGTGCATTCTGTAATTCCAAACAGACATGGGACTTGCATTCCGCTTTCTGTCTGAG
 
. : . : . : . : . : . :
rJMFF026C24+ AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
rJMFF042C04+ AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
rJMFF050J17+ AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
JMFS118D03- AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
rJMFF041J14+ AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
                      ____________________________________________________________
consensus AAGGTATTTCGGGTTCCACGACGATGGTGAGCCGGTTGTTCGTGCCTATGTTTGCGAGAA
 
. : . : . : . : . : . :
rJMFF026C24+ TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
rJMFF042C04+ TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
rJMFF050J17+ TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
JMFS118D03- TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
rJMFF041J14+ TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
                      ____________________________________________________________
consensus TGGACATGTTTCAGGTGCCTGGACTGACTGGTCCTTGTATACTTGAATGAATCACCTGCT
 
. : . : . : . : . : . :
rJMFF026C24+ TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
rJMFF042C04+ TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
rJMFF050J17+ TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
rJMFF048B23+ AAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
JMFS118D03- TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
rJMFF041J14+ TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
                      ____________________________________________________________
consensus TTGCTTCTCTAAAACCTGGTACTTTCAATATTATTATTATTGGAGTTCATATCTTGTGAT
 
. : . : . : . : . : . :
rJMFF026C24+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
rJMFF042C04+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
rJMFF050J17+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
rJMFF048B23+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGCTTCTGGTGAT
JMFS118D03- CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
rJMFF041J14+ CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
                      ____________________________________________________________
consensus CTAGTACCGCCATGGATGCTGAATTGTTGATTCATATCAGCAATTCTTGTTTCTGGTGAT
 
. : . : . : . : . : . :
rJMFF026C24+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
rJMFF042C04+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
rJMFF050J17+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
rJMFF048B23+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
JMFS118D03- GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
rJMFF041J14+ GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
                      ____________________________________________________________
consensus GTGGTTTATGTTCCTATTTCAGCATGTTTTCTTCTTGTTCTTCTATTCAAATGTCTTGCT
 
. : . : . : . : . : . :
rJMFF026C24+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
rJMFF042C04+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
rJMFF050J17+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
rJMFF048B23+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
JMFS118D03- TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
rJMFF041J14+ TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
                      ____________________________________________________________
consensus TATTGAGTATCAATGGTGAACAGCTATATCCATGTTTATAGCTCACCAAAACTGATATTA
 
. : . : . : . : . : . :
rJMFF026C24+ TTGAAGGTTTGCACTGCACTTTTGTTGATT
rJMFF042C04+ TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
rJMFF050J17+ TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
rJMFF048B23+ TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
JMFS118D03- TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
rJMFF041J14+ TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
                      ____________________________________________________________
consensus TTGAAGGTTTGCACTGCACTTTTGTTGATTTGGATGGATTGGATTGGATAGTTCAACTGT
 
. : . : . : . : . : . :
rJMFF042C04+ CCAAGTGCAAACTGC
rJMFF050J17+ CCAAGTGCAAACTGC
rJMFF048B23+ CCAAGTGCAAACTGCAAACACCCCCTTTGCAATTATTA
JMFS118D03- CCAAGTGCAAACTGCAAACACCCCCTTTGCAATTATTA
rJMFF041J14+ CCAAGTGCAAACTGCAAACACCCCCTTTGCAATTATTATATATGTTTCTTTAAAAAAAAT
                      ____________________________________________________________
consensus CCAAGTGCAAACTGCAAACACCCCCTTTGCAATTATTATATATGTTTCTTTAAAAAAAAT