| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005O07 | Sequence | 357 | 012391 (6) | ref|XP_004230168.1| | 7e-40 | PREDICTED: UPF0603 protein At1g54780, chloroplastic [Solanum lycopersicum] | |||||
| JMFF039N09 | Sequence | 518 | 012391 (6) | ref|XP_004230168.1| | 3e-50 | PREDICTED: UPF0603 protein At1g54780, chloroplastic [Solanum lycopersicum] | 703 | 012391 (6) | ref|XP_010278971.1| | 1e-114 | PREDICTED: UPF0603 protein At1g54780, chloroplastic-like [Nelumbo nucifera] |
| JMSF013F14 | Sequence | 575 | 012391 (6) | ref|XP_004230168.1| | 3e-83 | PREDICTED: UPF0603 protein At1g54780, chloroplastic [Solanum lycopersicum] | 680 | 012391 (6) | ref|XP_009602455.1| | 2e-123 | PREDICTED: UPF0603 protein At1g54780, chloroplastic [Nicotiana tomentosiformis] |
| JMSF044L13 | Sequence | 785 | 012391 (6) | ref|XP_010278971.1| | 1e-119 | PREDICTED: UPF0603 protein At1g54780, chloroplastic-like [Nelumbo nucifera] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF005O07- GTTACTGTTCAAATGGA
JMFF039N09- ATTCTTGATTTGTTACTGTTCAAATGGA
JMSF013F14- GTTACTGTTCAAATGGA
____________________________________________________________
consensus ATTCTTGATTTGTTACTGTTCAAATGGA
. : . : . : . : . : . :
JMFF005O07- GACCCTTCTCTCCACTCCATCTTTCTGTCCACTCTTCAATCCCAAACCTTCAAGACCTTC
JMFF039N09- GACCCTTCTCTCCACTCCATCTTTCTGTCCACTCTTCAATCCCAAACCTTCAAGACCTTC
JMSF013F14- GACCCTTCTCTCCACTCCATCTTTCTGTCCACTCTTCAATCCCAAACCTTCAAGACCTTC
____________________________________________________________
consensus GACCCTTCTCTCCACTCCATCTTTCTGTCCACTCTTCAATCCCAAACCTTCAAGACCTTC
. : . : . : . : . : . :
JMFF005O07- ACTTTCTTCCCAACACAGATCAAATTTTCTCACTTTACCAAAACCCCTTTCTTGCAGCCT
JMFF039N09- ACTTTCTTCCCAACACAGATCAAATTTTCTCACTTTACCAAAACCCCTTTCTTGCAGCCT
JMSF013F14- ACTTTCTTCCCAACACAGATCAAATTTTCTCACTTTACCAAAACCCCTTTCTTGCAGCCT
____________________________________________________________
consensus ACTTTCTTCCCAACACAGATCAAATTTTCTCACTTTACCAAAACCCCTTTCTTGCAGCCT
. : . : . : . : . : . :
JMFF005O07- CAGAAGAGAGCATTCTCTGCCTGAAAGACAACATCTTTCTCTACCCAAAACATGGATTTC
JMFF039N09- CAGAAGAGAGCATTCTCTGCCTGAAAGACAACATCTTTCTCTACCCAAAACATGGATTTC
JMSF013F14- CAGAAGAGAGCATTCTCTGCCTGAAAGACAACATCTTTCTCTACCCAAAACATGGATTTC
rJMSF044L13+ AAAACATGGATTTC
____________________________________________________________
consensus CAGAAGAGAGCATTCTCTGCCTGAAAGACAACATCTTTCTCTACCCAAAACATGGATTTC
. : . : . : . : . : . :
JMFF005O07- CCATGTCCATCAAGGCCTAGCTGCCCTTGCCATTTCTCTTGCTCTCAATTTCTGCCCTG-
JMFF039N09- CCATGTCCATCAAGGCCTAGCTGCCCTTGCCATTTCTCTTGCTCTCAATTTCTGCCCTG-
JMSF013F14- CCATGTCCATCAAGGCCTAGCTGCCCTTGCCATTTCTCTTGCTCTCAATTTCTGCCCTG-
rJMSF044L13+ CCATGTCCATCAAGGCCTAGCTGCCCTTGCCATTTCTCTTGCTCTCAATTTCTGCCCTGT
____________________________________________________________
consensus CCATGTCCATCAAGGCCTAGCTGCCCTTGCCATTTCTCTTGCTCTCAATTTCTGCCCTG-
. : . : . : . : . : . :
JMFF005O07- TTTTGCCCTCTGCTTCTGCACTGGCATCTGAGTTTGATGTTCTTAATGAAGG-CCCACCC
JMFF039N09- TTTTGCCCTCTGCTTCTGCACTGGCATCTGAGTTTGATGTTCTTAATGAAGG-CCCACCC
JMSF013F14- TTTTGCCCTCTGCTTCTGCACTGGCATCTGAGTTTGATGTTCTTAATGAAGG-CCCACCC
rJMSF013F14+ TTCTGCACTGGCATCTGAGTTTGATGTTCTTAATGAAGG-CCCACCC
rJMSF044L13+ TTTTGCCCTCTGCTTCTGCACTGGCATCTGAGTTTGATGTTCTTAATGAAGG-CCCACCC
rJMFF039N09+ TCTGCACTGGCATCTGAGTTTGATGTTCTTAATGAAGGCCCCACCC
____________________________________________________________
consensus TTTTGCCCTCTGCTTCTGCACTGGCATCTGAGTTTGATGTTCTTAATGAAGG-CCCACCC
. : . : . : . : . : . :
JMFF005O07- AAGGAATCTTAT-GTTGTTGATGATGCTGGGGTCCTTA
JMFF039N09- AAGGAATCTTATGGTTGTTGATGATGCTGGGGTCCTTAGCCGGGTCACACGATCCGATTT
JMSF013F14- AAGGAATCTTAT-GTTGTTGATGATGCTGGGGTCCTTAGCCGGGTCACACGATCCGATTT
rJMSF013F14+ AAGGAATCTTAT-GTTGTTGATGATGCTGGGGTCCTTAGCCGGGTCACACGATCCGATTT
rJMSF044L13+ AAGGAATCTTAT-GTTGTTGATGATGCTGGGGTCCTTAGCCGGGTCACACGATCCGATTT
rJMFF039N09+ AAGGAATCTTAT-GTTGTTGATGATGCTGGGGTCNTTAGCCGGGTCACACGATCCGATTT
____________________________________________________________
consensus AAGGAATCTTAT-GTTGTTGATGATGCTGGGGTCCTTAGCCGGGTCACACGATCCGATTT
. : . : . : . : . : . :
JMFF039N09- GAGGCGATTGTTGGAGGATTTGGAGTTCAGGAAAGGCTACCACATTAACTTCGTCACTGT
JMSF013F14- GAGGCGATTGTTGGAGGATTTGGAGTTCAGGAAAGGCTACCACATTAACTTCGTCACTGT
rJMSF013F14+ GAGGCGATTGTTGGAGGATTTGGAGTTCAGGAAAGGCTACCACATTAACTTCGTCACTGT
rJMSF044L13+ GAGGCGATTGTTGGAGGATTTGGAGTTCAGGAAAGGCTACCACATTAACTTCGTCACTGT
rJMFF039N09+ GAGGCGATTGTTGGAGGATTTGGAGTTCAGGAAAGGCTACCACATTAACTTCGTCACTGT
____________________________________________________________
consensus GAGGCGATTGTTGGAGGATTTGGAGTTCAGGAAAGGCTACCACATTAACTTCGTCACTGT
. : . : . : . : . : . :
JMFF039N09- CCGCAAGCTTACTAGCAAGGCTGATGCGTTTGAGTATGCTGACCAAGTTTTGGAGCGTTG
JMSF013F14- CCGCAAGCTTACTAGCAAGGCTGATGCGTTTGAGTATGCTGACCAAGTTTTGGAGCGTTG
rJMSF013F14+ CCGCAAGCTTACTAGCAAGGCTGATGCGTTTGAGTATGCTGACCAAGTTTTGGAGCGTTG
rJMSF044L13+ CCGCAAGCTTACTAGCAAGGCTGATGCGTTTGAGTATGCTGACCAAGTTTTGGAGCGTTG
rJMFF039N09+ CCGCAAGCTTACTAGCAAGGCTGATGCGTTTGAGTATGCTGACCAAGTTTTGGAGCGTTG
____________________________________________________________
consensus CCGCAAGCTTACTAGCAAGGCTGATGCGTTTGAGTATGCTGACCAAGTTTTGGAGCGTTG
. : . : . : . : . : . :
JMFF039N09- GTATCCCACGGT
JMSF013F14- GTATCCCACGGTTGAGGAAGGTAGCAATAAGGGCATAGTCGTGCTGGTAACGAGTCAGAA
rJMSF013F14+ GTATCCCACGGTTGAGGAAGGTAGCAATAAGGGCATAGTCGTGCTGGTAACGAGTCAGAA
rJMSF044L13+ GTATCCCACGGTTGAGGAAGGTAGCAATAAGGGCATAGTCGTGCTGGTAACGAGTCAGAA
rJMFF039N09+ GTATCCCACGGTTGAGGAAGGTAGCAATAAGGGCATAGTCGTGCTGGTAACGAGTCAGAA
____________________________________________________________
consensus GTATCCCACGGTTGAGGAAGGTAGCAATAAGGGCATAGTCGTGCTGGTAACGAGTCAGAA
. : . : . : . : . : . :
JMSF013F14- GGAAGGGGCAATCACGGGTG
rJMSF013F14+ GGAAGGGGCAATCACGGGTGGACCTGAATTTGTGAAGGCAGTTGGTGACACTATTCTTGA
rJMSF044L13+ GGAAGGGGCAATCACGGGTGGACCTGAATTTGTGAAGGCAGTTGGTGACACTATTCTTGA
rJMFF039N09+ GGAAGGGGCAATCACGGGTGGACCTGAATTTGTGAAGGCAGTTGGTGACACTATTCTTGA
____________________________________________________________
consensus GGAAGGGGCAATCACGGGTGGACCTGAATTTGTGAAGGCAGTTGGTGACACTATTCTTGA
. : . : . : . : . : . :
rJMSF013F14+ TGCTACGGTTTCAGAGAACCTCCCAGTCTTGGCAACTGAGGAGAAGTACAACGAAGCAGT
rJMSF044L13+ TGCTACGGTTTCAGAGAACCTCCCAGTCTTGGCAACTGAGGAGAAGTACAACGAAGCAGT
rJMFF039N09+ TGCTACGGTTTCAGAGAACCTCCCAGTCTTGGCAACTGAGGAGAAGTACAACGAAGCAGT
____________________________________________________________
consensus TGCTACGGTTTCAGAGAACCTCCCAGTCTTGGCAACTGAGGAGAAGTACAACGAAGCAGT
. : . : . : . : . : . :
rJMSF013F14+ CTACAGCACTGCCAAGCGCCTCGTTGCTGCCATCGATGGGCTTCCTGACCCTGGTGGGCC
rJMSF044L13+ CTACAGCACTGCCAAGCGCCTCGTTGCTGCCATCGATGGGCTTCCTGACCCTGGTGGGCC
rJMFF039N09+ CTACAGCACTGCCAAGCGCCTCGTTGCTGCCATCGATGGGCTTCCTGACCCTGGTGGGCC
____________________________________________________________
consensus CTACAGCACTGCCAAGCGCCTCGTTGCTGCCATCGATGGGCTTCCTGACCCTGGTGGGCC
. : . : . : . : . : . :
rJMSF013F14+ CGTGTTCAAGGACAACAAGCGAGAATCCAACTTCAAAACCAAAGAGGAGACGGAAGAGAA
rJMSF044L13+ CGTGTTCAAGGACAACAAGCGAGAATCCAACTTCAAAACCAAAGAGGAGACGGAAGAGAA
rJMFF039N09+ CGTGTTCAAGGACAACAAGCGAGAATCCAACTTCAAAACCAAAGAGGAGACGGAAGAGAA
____________________________________________________________
consensus CGTGTTCAAGGACAACAAGCGAGAATCCAACTTCAAAACCAAAGAGGAGACGGAAGAGAA
. : . : . : . : . : . :
rJMSF013F14+ AAGAGGGCAGTTTTCACTTGTAGTTGGCGGTTTGTTAGTGATTGCTTTTGTTGTTCCAAT
rJMSF044L13+ AAGAGGGCAGTTTTCACTTGTAGTTGGCGGTTTGTTAGTGATTGCTTTTGTTGTTCCAAT
rJMFF039N09+ AAGAGGGCAGTTTTCACTTGTAGTTGGCGGTTTGTTAGTGATTGCTTTTGTTGTTCCAAT
____________________________________________________________
consensus AAGAGGGCAGTTTTCACTTGTAGTTGGCGGTTTGTTAGTGATTGCTTTTGTTGTTCCAAT
. : . : . : . : . : . :
rJMSF013F14+ GGCACAATATTATGCGTATGTTTCCAAGAAATGAA
rJMSF044L13+ GGCACAATATTATGCGTATGTTTCCAAGAAATGAAACTGTAGTATCGATGTTCCTGTGAC
rJMFF039N09+ GGCACAATATTATGCGTATGTTTCCAAGAAATG-AACTGTAGTATCGATGTTCCTGTGAC
____________________________________________________________
consensus GGCACAATATTATGCGTATGTTTCCAAGAAATGAAACTGTAGTATCGATGTTCCTGTGAC
. : . : . : . : . : . :
rJMSF044L13+ TTGAGTAAAACATGGATACACTCTCAGTGTAC
rJMFF039N09+ TTGAGT-AAACATGGATACACTCTCAGTGTACAAATTGTGATTTGGGAAATAAATAATTC
____________________________________________________________
consensus TTGAGTAAAACATGGATACACTCTCAGTGTACAAATTGTGATTTGGGAAATAAATAATTC