Contig 012373:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-                                                                      G
                      ____________________________________________________________
consensus                                                                        G
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           TATTTACACAATCAAAATGTTATCCACAGGGATATTAAATGCGCAAACATATTGGTGGAT
rJMSF051L01+                                                                     T
rJMSF013F10+                                 CCACAGGGATATTAAATGCGCAAACATATTGGTGGAT
                      ____________________________________________________________
consensus             TATTTACACAATCAAAATGTTATCCACAGGGATATTAAATGCGCAAACATATTGGTGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           ACTACTGGGTTAGTAAAACTTGCAGATTTTGGCCTTGCAAAGGCCACTAAACTGAATAAT
rJMSF051L01+          ACTACTGGGTTAGTAAAACTTGCAGATTTTGGCCTTGCAAAGGCCACTAAACTGAATAAT
rJMSF013F10+          ACTACTGGGTTAGTAAAACTTGCAGATTTTGGCCTTGCAAAGGCCACTAAACTGAATAAT
                      ____________________________________________________________
consensus             ACTACTGGGTTAGTAAAACTTGCAGATTTTGGCCTTGCAAAGGCCACTAAACTGAATAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           GTGAAGTCTTGCAAGGGCACTCCCTTCTGGATGGCTCCTGAGGTTGTTAATCCGAGGAGT
rJMSF051L01+          GTGAAGTCTTGCAAGGGCACTCCCTTCTGGATGGCTCCTGAGGTTGTTAATCCGAGGAGT
rJMSF013F10+          GTGAAGTCTTGCAAGGGCACTCCCTTCTGGATGGCTCCTGAGGTTGTTAATCCGAGGAGT
                      ____________________________________________________________
consensus             GTGAAGTCTTGCAAGGGCACTCCCTTCTGGATGGCTCCTGAGGTTGTTAATCCGAGGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           GGTGGCTATGGTCTTTCTGCAGACATATGGAGCCTTGGCTGCACTGTCTTGGAGATGCTT
rJMSF051L01+          GGTGGCTATGGTCTTTCTGCAGACATATGGAGCCTTGGCTGCACTGTCTTGGAGATGCTT
rJMSF013F10+          GGTGGCTATGGTCTTTCTGCAGACATATGGAGCCTTGGCTGCACTGTCTTGGAGATGCTT
                      ____________________________________________________________
consensus             GGTGGCTATGGTCTTTCTGCAGACATATGGAGCCTTGGCTGCACTGTCTTGGAGATGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           ACAAGCCAGTTCCCTTACTCCACTCTAGAAAATCCCATGCAGGCACTGTATAAGATTGGA
rJMSF051L01+          ACAAGCCAGTTCCCTTACTCCACTCTAGAAAATCCCATGCAGGCACTGTATAAGATTGGG
rJMSF013F10+          ACAAGCCAGTTCCCTTACTCCACTCTAGAAAATCCCATGCAGGCACTGTATAAGATTGGA
                      ____________________________________________________________
consensus             ACAAGCCAGTTCCCTTACTCCACTCTAGAAAATCCCATGCAGGCACTGTATAAGATTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           CAGGGTGAGCCACCTCATGTGCCTAATACGCTCTCAAAGGATGCACGAAACTTTATACAT
rJMSF051L01+          CAGGGTGAGCCACCTCATGTGCCTAATACGCTCTCAAAGGATGCACGAAACTTTATACAT
rJMSF013F10+          CAGGGTGAGCCACCTCATGTGCCTAATACGCTCTCAAAGGATGCACGAAACTTTATACAT
                      ____________________________________________________________
consensus             CAGGGTGAGCCACCTCATGTGCCTAATACGCTCTCAAAGGATGCACGAAACTTTATACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           AAGTGTCTTCAAGTAGACCCAAATTGTCGTCCAAATGCTTCTCAGTTACTGGACCACCCA
rJMSF051L01+          AAGTGTCTTCAAGTAGACCCAAATTGTCGTCCAAATGCTTCTCAGTTACTGGACCACCCA
rJMSF013F10+          AAGTGTCTTCAAGTAGACCCAAATTGTCGTCCAAATGCTTCTCAGTTACTGGACCACCCA
                      ____________________________________________________________
consensus             AAGTGTCTTCAAGTAGACCCAAATTGTCGTCCAAATGCTTCTCAGTTACTGGACCACCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           TTCGTGAAACGACCACTTACCTCATCCTCAGGTTCAGCTTCTCCTCGCTATATAGGCAGG
rJMSF051L01+          TTCGTGAAACGACCACTTACCTCATCCTCAGGTTCAGCTTCTCCTCGCTATATAGGCAGG
rJMSF013F10+          TTCGTGAAACGACCACTTACCTCATCCTCAGGTTCAGCTTCTCCTCGCTATATAGGCAGG
rJMFF035N17+               GAAACGACCACTTACCTCATCNTCAGGTTCAGCTTCTCCTCGCTATATAGGCAGG
                      ____________________________________________________________
consensus             TTCGTGAAACGACCACTTACCTCATCCTCAGGTTCAGCTTCTCCTCGCTATATAGGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           CGGCTTTGAGAAGTGTTGCTGCAAGTACAAATGATGGCTATGCTGCTTCCCCAGAGGCTG
rJMSF051L01+          CGGCTTTGAGAAGTGTTGCTGCAAGTACAAATGATGGCTATGCTGCTTCCCCAGAGGCTG
rJMSF013F10+          CGGCTTTGAGAAGTGTTGCTGCAAGTACAAATGATGGCTATGCTGCTTCCCCAGAGGCTG
rJMFF035N17+          CGGCTTTGAGAAGTGTTGCTGCAAGTACAAATGATGGCTATGCTGCTTCCCCAGAGGCTG
                      ____________________________________________________________
consensus             CGGCTTTGAGAAGTGTTGCTGCAAGTACAAATGATGGCTATGCTGCTTCCCCAGAGGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           GATACATCGCCCATATTTTATATTTCCTCAACCGTGCTTGAGCTGCTGGCTGGCTGGCGC
rJMSF051L01+          GATACATCGCCCATATTTTATATTTCCTCAACCGTGCTTGAGCTGCTGGCTGGCTGGCGC
rJMSF013F10+          GATACATCGCCCATATTTTATATTTCCTCAACCGTGCTTGAGCTGCTGGCTGGCTGGCGC
rJMFF035N17+          GATACATCGCCCATATTTTATATTTCCTCAACCGTGCTTGAGCTGCTGGCTGGCTGGCGC
                      ____________________________________________________________
consensus             GATACATCGCCCATATTTTATATTTCCTCAACCGTGCTTGAGCTGCTGGCTGGCTGGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS055F07-           TATTTGATTTCGGCTG                                            
rJMSF051L01+          TATTTGATTTCGGCTGTGAATAAATGTTACCACGGTTGAGGCTAGGTTGTTGGCAGTTGT
rJMSF013F10+          TATTTGATTTCGGCTGTGAATAAATGTTACCACGGTTGAGGCTAGGTTGTTGGCAGTTGT
rJMFF035N17+          TATTTGATTTCGGCTGTGAATAAATGTTACCACGGTTGAGGCTAGGTTGTTGGCAGTTGT
                      ____________________________________________________________
consensus             TATTTGATTTCGGCTGTGAATAAATGTTACCACGGTTGAGGCTAGGTTGTTGGCAGTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051L01+          GAGAGTATATTTTTATTATTTACAATTCTTTTTACGTTATAGTTAGTGTGGCCTATTATT
rJMSF013F10+          GAGAGTATATTTTTATTATTTACAATTCTTTTTACGTTATAGTTAGTGTGGCCTATTATT
rJMFF035N17+          GAGAGTATATTTTTATTATTTACAATTCTTTTTACGTTATAGTTAGTGTGGCCTATTATT
                      ____________________________________________________________
consensus             GAGAGTATATTTTTATTATTTACAATTCTTTTTACGTTATAGTTAGTGTGGCCTATTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051L01+          NGTTTTTTTGTCCCTGGTTTTTCATGGGTC                              
rJMSF013F10+          TGTTTTTTTGTCCCTGGTTTTTCATGGGTCTTAGAGATCAAATGTCAAAGTATGAATTGT
rJMFF035N17+          TGTTTTTTTGTCCCTGGTTTTTCATGGGTCTTAGAGATCAAATGTCAAAGTATGAATTGT
                      ____________________________________________________________
consensus             TGTTTTTTTGTCCCTGGTTTTTCATGGGTCTTAGAGATCAAATGTCAAAGTATGAATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013F10+          ATATATG                                                     
rJMFF035N17+          ATATATGTAGCTAGGCTTTGTCTTTGGGTGAGAAATGTAGATTTTCTTGTACGATTAGGG
                      ____________________________________________________________
consensus             ATATATGTAGCTAGGCTTTGTCTTTGGGTGAGAAATGTAGATTTTCTTGTACGATTAGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035N17+          TGTTTAATTTATTGTAACTTGTTCAAATTAGCAATTTATATCATGGATCAGGGTTCACAT
                      ____________________________________________________________
consensus             TGTTTAATTTATTGTAACTTGTTCAAATTAGCAATTTATATCATGGATCAGGGTTCACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035N17+          AGCATTATGGACAGAAAGTAACAAGGTATAGAATTTATACACATTATGGATCATGAATTT
                      ____________________________________________________________
consensus             AGCATTATGGACAGAAAGTAACAAGGTATAGAATTTATACACATTATGGATCATGAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035N17+          AAATAACGAGGTACAGAATTTATACTCGTAATGTACAAAATTCGTACCCTTAAATGTACA
                      ____________________________________________________________
consensus             AAATAACGAGGTACAGAATTTATACTCGTAATGTACAAAATTCGTACCCTTAAATGTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035N17+          TAACTTCATAACATAAGGCATCAAATCACAACACAAAATACATACACATGAACCATGGTC
                      ____________________________________________________________
consensus             TAACTTCATAACATAAGGCATCAAATCACAACACAAAATACATACACATGAACCATGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF035N17+          CATAGTGTAGTGTGAACTTTGATCCATGGTATACAAATTGGTTAAAGTTGTATGACACGA
                      ____________________________________________________________
consensus             CATAGTGTAGTGTGAACTTTGATCCATGGTATACAAATTGGTTAAAGTTGTATGACACGA