| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035D19 | Sequence | 540 | 001728 (4) | 689 | 012371 (4) | emb|CDP20325.1| | 2e-11 | unnamed protein product [Coffea canephora] | |||
| JMFF038F15 | Sequence | 354 | 001728 (4) | 728 | 012371 (4) | ref|XP_010109822.1| | 2e-13 | hypothetical protein L484_018479 [Morus notabilis] gb|EXC24765.1| hypothetical p | |||
| JMSF027H22 | Sequence | 666 | 001728 (4) | ref|XP_009781256.1| | 261 | PREDICTED: uncharacterized protein LOC104230215 [Nicotiana sylvestris] ref|XP_00 | 761 | 012371 (4) | emb|CDP20325.1| | 2e-19 | unnamed protein product [Coffea canephora] |
| JMSF031P05 | Sequence | 673 | 001728 (4) | ref|XP_009781256.1| | 314 | PREDICTED: uncharacterized protein LOC104230215 [Nicotiana sylvestris] ref|XP_00 | 693 | 012371 (4) | emb|CDP20325.1| | 2e-13 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF027H22+ AAGTTGG
____________________________________________________________
consensus AAGTTGG
. : . : . : . : . : . :
rJMSF027H22+ TCAATCTCCCGAGAATTGGACGAGTGGGGTTGACTTGGGCCGCCTCCTTGATCTCCTTGA
rJMFF038F15+ TCTCCTTGA
____________________________________________________________
consensus TCAATCTCCCGAGAATTGGACGAGTGGGGTTGACTTGGGCCGCCTCCTTGATCTCCTTGA
. : . : . : . : . : . :
rJMSF027H22+ ACTCGATCTCGTTACATCCAATGAAGCTCTTCAAGCGGCACTAAAAGAGCAGAGAAATGC
rJMSF031P05+ CGATCTCGTTACATCCAATGAAGCTCTTCAAGCGGCACTAAAAGAGCAGAGAAATGC
rJMFF038F15+ ACTCGATCTCGTTACATCCAATGAAGCTCTTCAAGCGGCACTAAAAGAGCAGAGAAATGC
rJMFF035D19+ CAAGCGGCACTAAAAGAGCAGAGAAATGC
____________________________________________________________
consensus ACTCGATCTCGTTACATCCAATGAAGCTCTTCAAGCGGCACTAAAAGAGCAGAGAAATGC
. : . : . : . : . : . :
rJMSF027H22+ TGGTGCATCACAAGTGGGAATCGGGTCTACTGTGGCTGAGTCATCATCGCCTGGTGAGCG
rJMSF031P05+ TGGTGCATCACAAGTGGGAATCGGGTCTACTGTGGCTGAGTCATCATCGCCTGGTGAGCG
rJMFF038F15+ TGGTGCATCACAAGTGGGAATCGGGTCTACTGTGGCTGAGTCATCATCGCCTGGTGAGCG
rJMFF035D19+ TGGTGCATCACAAGTGGGAATCGGGTCTACTGTGGCTGAGTCATCATCGCCTGGTGAGCG
____________________________________________________________
consensus TGGTGCATCACAAGTGGGAATCGGGTCTACTGTGGCTGAGTCATCATCGCCTGGTGAGCG
. : . : . : . : . : . :
rJMSF027H22+ AGGAGGAGTTGGTGATTTGAAAGAGAAGGCCGAGGAGGAGGAGAAGTTTGAAACACTTGA
rJMSF031P05+ AGGAGGAGTTGGTGATTTGAAAGAGAAGGCCGAGGAGGAGGAGAAGTTTGAAACACTTGA
rJMFF038F15+ AGGAGGAGTTGGTGATTTGAAAGAGAAGGCCGAGGAGGAGGAGAAGTTTGAAACACTTGA
rJMFF035D19+ AGGAGGAGTTGGTGATTTGAAAGAGAAGGCCGAGGAGGAGGAGAAGTTTGAAACACTTGA
____________________________________________________________
consensus AGGAGGAGTTGGTGATTTGAAAGAGAAGGCCGAGGAGGAGGAGAAGTTTGAAACACTTGA
. : . : . : . : . : . :
rJMSF027H22+ TCTAAACGTCCAGCAAGTTCCCATTGATGGTGATTTTGAGGTGCCGGGATTAATCCCACC
rJMSF031P05+ TCTAAACGTCCAGCAAGTTCCCATTGATGGTGATTTTGAGGTGCCGGGATTAATCCCACC
rJMFF038F15+ TCTAAACGTCCAGCAAGTTCCCATTGATGGTGATTTTGAGGTGCCGGGATTAATCCCACC
rJMFF035D19+ TCTAAACGTCCAGCAAGTTCCCATTGATGGTGATTTTGAGGTGCCGGGATTAATCCCACC
____________________________________________________________
consensus TCTAAACGTCCAGCAAGTTCCCATTGATGGTGATTTTGAGGTGCCGGGATTAATCCCACC
. : . : . : . : . : . :
rJMSF027H22+ CCACGAACACGAATTTCAGATTCAGATTCCGAGCAGAAATGAACCACCTCCCACTCCGCA
rJMSF031P05+ CCACGAACACGAATTTCAGATTCAGATTCCGAGCAGAAATGAACCACCTCCCACTCCGCA
rJMFF038F15+ CCACGAACACGAATTTCAGATTCAGATTCCGAGCAGAAATGAACCACCTCCCACTCCGCA
rJMFF035D19+ CCACGAACACGAATTTCAGATTCAGATTCCGAGCAGAAATGAACCACCTCCCACTCCGCA
____________________________________________________________
consensus CCACGAACACGAATTTCAGATTCAGATTCCGAGCAGAAATGAACCACCTCCCACTCCGCA
. : . : . : . : . : . :
rJMSF027H22+ CCAGTTCATTCCAAGCATCGCTGATGCATCTCCAGTGCACCGACAGAAGGGGGAAAGAGT
rJMSF031P05+ CCAGTTCATTCCAAGCATCGCTGATGCATCTCCAGTGCACCGACAGAAGGGGGAAAGAGT
rJMFF038F15+ CCAGTTCATTCCAAGCATCGCTGATGCATCTCCAGTGCACCGACAGAAGGGGGAAAGAGT
rJMFF035D19+ CCAGTTCATTCCAAGCATCGCTGATGCATCTCCAGTGCACCGACAGAAGGGGGAAAGAGT
____________________________________________________________
consensus CCAGTTCATTCCAAGCATCGCTGATGCATCTCCAGTGCACCGACAGAAGGGGGAAAGAGT
. : . : . : . : . : . :
rJMSF027H22+ TGAATCGAAAAATGGGCATAGCCATAAGTCGGGTGACGAAGAGTTTTCTGTTGTTTCTTT
rJMSF031P05+ TGAATCGAAAAATGGGCATAGCCATAAGTCGGGTGACGAAGAGTTTTCTGTTGTTTCTTT
rJMFF038F15+ TGAATCGAAAAATGGGCATAGCCATAAGTCGGGTGACGAAGAGTTTTCTGTTGTTTCTTT
rJMFF035D19+ TGAATCGAAAAATGGGCATAGCCATAAGTCGGGTGACGAAGAGTTTTCTGTTGTTTCTTT
____________________________________________________________
consensus TGAATCGAAAAATGGGCATAGCCATAAGTCGGGTGACGAAGAGTTTTCTGTTGTTTCTTT
. : . : . : . : . : . :
rJMSF027H22+ GGAGTTAGGTGAACCTGAAGTGAAGAGAAGAAAGGTTTTGGAATCTCAGTTGGCTTGGCT
rJMSF031P05+ GGAGTTAGGTGAACCTGAAGTGAAGAGAAGAAAGGTTTTGGAATCTCAGTTGGCTTGGCT
rJMFF038F15+ GGAGTTAGGTGAACCTGAAGTGAAGAGAAGAAAGGTTTTGGAATCTCAGTTGGCTTGGCT
rJMFF035D19+ GGAGTTAGGTGAACCTGAAGTGAAGAGAAGAAAGGTTTTGGAATCTCAGTTGGCTTGGCT
____________________________________________________________
consensus GGAGTTAGGTGAACCTGAAGTGAAGAGAAGAAAGGTTTTGGAATCTCAGTTGGCTTGGCT
. : . : . : . : . : . :
rJMSF027H22+ TCATGACTTGTCCAGATAACTAAATACCCAAACCCAAGTTCAAGTTGAGAGGTTTAAGGA
rJMSF031P05+ TCATGACTTGTCCAGATAACTAAATACCCAAACCCAAGTTCAAGTTGAGAGGTTTAAGGA
rJMFF038F15+ TCATGACTTGTCCAGATAACTAAATACCCAAACCCAAGTTCAAGTTGAGAGGTTTAAGGA
rJMFF035D19+ TCATGACTTGTCCAGATAACTAAATACCCAAACCCAAGTTCAAGTTGAGAGGTTTAAGGA
____________________________________________________________
consensus TCATGACTTGTCCAGATAACTAAATACCCAAACCCAAGTTCAAGTTGAGAGGTTTAAGGA
. : . : . : . : . : . :
rJMSF027H22+ AACCTACAATTGGGTTATTCTTTCTCACATCTAATTGTGAATGAATGAATGAATGAATGT
rJMSF031P05+ AACCTACAATTGGGTTATTCTTTCTCACATCTAATTGTGAATGAATGAATGAATGAATGT
rJMFF038F15+ AACCTACAATTGGGTTATTCTTTCTCACATCTAATTGTGAATGAATGAATGAATGAATGT
rJMFF035D19+ AACCTACAATTGGGTTATTCTTTCTCACATCTAATTGTGAATGAATGAATGAATGAATGT
____________________________________________________________
consensus AACCTACAATTGGGTTATTCTTTCTCACATCTAATTGTGAATGAATGAATGAATGAATGT
. : . : . : . : . : . :
rJMSF027H22+ TACAACAGCTCTAGCCTCTAGCCTCTAGATTAGTGTTGTATGATATAATACAAATCTTCA
rJMSF031P05+ TACAACAGCTCTAGCCTCTAGCCTCTAGATTAGTGTTGTATGATATAATACAAATCTTCA
rJMFF038F15+ TACAACAGCTCTAGCCTCTAGCCTCTAGATTAGTGTTGTATGATATAATACAAATCTTCA
rJMFF035D19+ TACAACAGCTCTAGCCTCTAGCCTCTAGATTAGTGTTGTATGATATAATACAAATCTTCA
____________________________________________________________
consensus TACAACAGCTCTAGCCTCTAGCCTCTAGATTAGTGTTGTATGATATAATACAAATCTTCA
. : . : . : . : . : . :
rJMSF027H22+ AATCACCAAGGGAAC
rJMSF031P05+ AATCAC
rJMFF038F15+ AATCACAAGGGAACTGTAATTATTTATATGCACTTTTACTGGGAACCGTCACACCAACG
rJMFF035D19+ AATCACAAGGGAACTGTAATTATTTATATGCACTTTTACTGGGAACCGTCACACCAACGT
____________________________________________________________
consensus AATCACAAGGGAACTGTAATTATTTATATGCACTTTTACTGGGAACCGTCACACCAACGT