Contig 012355:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035F23+                                                                   GAT
rJMSF030N05+                                                        GGGCTTCCTTGGAT
                      ____________________________________________________________
consensus                                                           GGGCTTCCTTGGAT
 
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rJMSF035F23+          AAAGAACATTCTGGTGCTTTAATGGGTGGTATTGAAGCTTTGAAAGCTAGCACTCTACGT
rJMSF030N05+          AAAGAACATTCTGTTGCTTTAATGGGTGGTATTGAAGCTTTGAAAGCTAGCACTCTACGT
rJMFF033B03+                               ATGGGTGGTATTGAAGCTTTGAAAGNTAGCACTCTACGT
                      ____________________________________________________________
consensus             AAAGAACATTCTGTTGCTTTAATGGGTGGTATTGAAGCTTTGAAAGCTAGCACTCTACGT
 
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rJMSF035F23+          CTTCCTGTTCTTGCCGGAGCAATTGTTGACATTCAAAGCTTGAAGGAAGCTATTGGTTCA
rJMSF030N05+          CTTCCTGTTCTTGCCGGAGCAATTGTTGACATTCAAAGCTTGAAGGAAGCTATTGGTTCA
rJMFF033B03+          CTTCCTGTTNTTGCCGGAGCAATTGTTGACATTCAAAGCTTGAAGGAAGCTATTGGTTCA
                      ____________________________________________________________
consensus             CTTCCTGTTCTTGCCGGAGCAATTGTTGACATTCAAAGCTTGAAGGAAGCTATTGGTTCA
 
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rJMSF035F23+          ACAGTTGATGTGATGCAAGCATTGGTAACCTCAGTCTGTTCGCTTTTGGCAAAGGTAGAA
rJMSF030N05+          ACAGTTGATGTGATGCAAGCATTGGTAACCTCAGTCTGTTCGCTTTTGGCAAAGGTAGAA
rJMFF033B03+          ACAGTTGATGTGATGCAAGCATTGGTAACCTCAGTCTGTTCGCTNNTGGCAAAGGTAGAA
                      ____________________________________________________________
consensus             ACAGTTGATGTGATGCAAGCATTGGTAACCTCAGTCTGTTCGCTTTTGGCAAAGGTAGAA
 
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rJMSF035F23+          GAAGCGAATATTTTGGTAATTGAACTGGCTAAAATAACTGCAAAGGAGCGGGTTTTACTA
rJMSF030N05+          GAAGCGAATATTTTGGTAATTGAACTGGCTAAAATAACTGCAAAGGAGCGGGTTTTACTA
rJMFF033B03+          GAAGCGAATATTNNGGTAATTGAACTGGCTAAAATAACTGCAAAGGAGCGGGTTTTACTA
                      ____________________________________________________________
consensus             GAAGCGAATATTTTGGTAATTGAACTGGCTAAAATAACTGCAAAGGAGCGGGTTTTACTA
 
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rJMSF035F23+          GAACAATGCAAAGATTTCTTGTCTATGGTAGCAACGATGCAGGTTAAGGATTGTAGTTTG
rJMSF030N05+          GAACAATGCAAAGATTTCTTGTCTATGGTAGCAACGATGCAGGTTAAGGATTGTAGTTTG
rJMFF033B03+          GAACAATGCAAAGATTTCTTGTCTATGGTAGCAACGATGCAGGTTAAGGATTGTAGTTTG
                      ____________________________________________________________
consensus             GAACAATGCAAAGATTTCTTGTCTATGGTAGCAACGATGCAGGTTAAGGATTGTAGTTTG
 
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rJMSF035F23+          AGAACACATGTATTACAACATCGACGTGTATCAACAGCCTGACAAAGACCTCTGTAGATC
rJMSF030N05+          AGAACACATGTATTACAACATCGACGTGTATCAACAGCCTGACAAAGACCTCTGTAGATC
rJMFF033B03+          AGAACNCATGTATTACAACATCGACGTGTATCAACAGCCTGACAAAGACCTCTGTAGATC
                      ____________________________________________________________
consensus             AGAACACATGTATTACAACATCGACGTGTATCAACAGCCTGACAAAGACCTCTGTAGATC
 
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rJMSF035F23+          TGATCTTCATTTGACCGACTCTAAATTCTAACACCGCATCAAACCTTTCAACCCGGTGGA
rJMSF030N05+          TGATCTTCATTTGACCGACTCTAAATTCTAACACCGCATCAAACCTTTCAACCCGGTGGA
rJMFF033B03+          TGATCTTCATTTGACCGACTCTAAATTCTAACACCGCATCAAACCTTTCAACCCGGTGGA
                      ____________________________________________________________
consensus             TGATCTTCATTTGACCGACTCTAAATTCTAACACCGCATCAAACCTTTCAACCCGGTGGA
 
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rJMSF035F23+          GGTGTCATTTCGGAGTTGCACCAAACAACTAATTTTGGCTTCTCATCGCCATTTTTGGAA
rJMSF030N05+          GGTGTCATTTCGGAGTTGCACCAAACAACTAATTTTGGCTTCTCATCGCCATTTTTGGAA
rJMFF033B03+          GGTGTCATTTNGGAGTTGCACCAAACAACTAATTTTGGNTTCTCATCGCCATTTTNGGAA
                      ____________________________________________________________
consensus             GGTGTCATTTCGGAGTTGCACCAAACAACTAATTTTGGCTTCTCATCGCCATTTTTGGAA
 
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rJMSF035F23+          CACGTCTCTTCCCCTTGCATGACATGTACTTCTACACCCGAATATTCTGCAAGCGATTTT
rJMSF030N05+          CACGTCTCTTCCCCTTGCATGACATGTACTTCTACACCCGAATATTCTGCAAGCGATTTT
rJMFF033B03+          CACGTCTCTTCCCCTTGCATGACATGTACTTNTACACCCGAATATTCTGCAAGCGATTTT
                      ____________________________________________________________
consensus             CACGTCTCTTCCCCTTGCATGACATGTACTTCTACACCCGAATATTCTGCAAGCGATTTT
 
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rJMSF035F23+          CCTTCTCACTAATCTC-TGTATACGCGATCTAACGTATCCCTAATTCCTGCTATCAACTG
rJMSF030N05+          CCTTCTCACTAATCTC-TGTATACGCGATCTAACGTATCCCTAATTCCTGCTATCAACTG
rJMFF033B03+          CCTTCTCAGTAATCTCGTGTATACGCGATCTAACGTATCCGTAATTCCTGCTATCAACTG
                      ____________________________________________________________
consensus             CCTTCTCACTAATCTC-TGTATACGCGATCTAACGTATCCCTAATTCCTGCTATCAACTG
 
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rJMSF035F23+          TCTAGTAAAAAGGAAGAAAACTGATGTGTATATATGTACAATTCTATT            
rJMSF030N05+          TCTAGTAAAAAGGAAGAAAACTGATGTGTATATATGTACAATTCTATTTAGAATGT    
rJMFF033B03+          TNTAGTAAAAAGGAAGAAAACNGANGTGTATATATGTACAATTNTATTTAGAATGTTACC
                      ____________________________________________________________
consensus             TCTAGTAAAAAGGAAGAAAACTGATGTGTATATATGTACAATTCTATTTAGAATGTTACC