Contig 012350:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032H21Sequence555005208 (2)ref|XP_009803666.1|4e-62PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X2 731012350 (3)ref|XP_006345732.1|2e-124PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like [Solanum tu
JMFN029F09Sequence612012350 (3)ref|XP_006345732.1|1e-112PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like [Solanum tu
JMSF036M02Sequence674005208 (2)ref|XP_009803666.1|1e-76PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X2 695012350 (3)ref|XP_006345732.1|4e-121PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like [Solanum tu

Alignment

This contig is upended


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rJMFF032H21+                                                           ACAGTGTCGNT
                      ____________________________________________________________
consensus                                                              ACAGTGTCGNT
 
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JMFN029F09-                                                        AGTCTCATACAGTTC
rJMSF036M02+                 TCCTACCAATGGCGTTTCCAGGGCTACGGAGCGACAATAGTCTCATACAGTTC
rJMFF032H21+          CTCATATTCCTACAAATGGCGTTTCCAGGGCTACGGAGCGACAATAGTCTCATACAGTTC
                      ____________________________________________________________
consensus             CTCATATTCCTACCAATGGCGTTTCCAGGGCTACGGAGCGACAATAGTCTCATACAGTTC
 
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JMFN029F09-           AACCGCCAGTTAAAGAGATGCGACTATGATTTAGTGTCGTGGAGAAAGACAGTCGAGCCT
rJMSF036M02+          AACCGCCAGTTAAAGAGATGCGACTATGATTTAGTGTCGTGGAGAAAGACAGTCGAGCCT
rJMFF032H21+          ANCCGCCAGTTAAAGAGATGCGACTATGATTTAGTGTCGTGGAGAAAGACAGTCGAGCCT
                      ____________________________________________________________
consensus             AACCGCCAGTTAAAGAGATGCGACTATGATTTAGTGTCGTGGAGAAAGACAGTCGAGCCT
 
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JMFN029F09-           CGTGCGGGCCCTGAACTACGGAGGGGGTTCGAGTTGTTAGACCTGGATGGCGGAATAGGA
rJMSF036M02+          CGTGCGGGCCCTGAACTACGGAGGGGGTTCGAGTTGTTAGACCTGGATGGCGGAATAGGA
rJMFF032H21+          CGTGCGGGCCCTGAACTACGGAGGGGGTTCGAGTTGTTAGACCTGGATGGCGGAATAGGA
                      ____________________________________________________________
consensus             CGTGCGGGCCCTGAACTACGGAGGGGGTTCGAGTTGTTAGACCTGGATGGCGGAATAGGA
 
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JMFN029F09-           TGGGAGCTGTTAACGTCAATGGTGCGCTATAAGGCACGCCAAAGAATCAGCGCAAAGACG
rJMSF036M02+          TGGGAGCTGTTAACGTCAATGGTGCGCTATAAGGCACGCCAAAGAATCAGCGCAAAGACG
rJMFF032H21+          TGGGAGCTGTTAACGTCAATGGTGCGCTATAAGGCACGCCAAAGAATCAGCGCAAAGACG
                      ____________________________________________________________
consensus             TGGGAGCTGTTAACGTCAATGGTGCGCTATAAGGCACGCCAAAGAATCAGCGCAAAGACG
 
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JMFN029F09-           GCATTGGCTCACCCTTATTTTGACCGAGAAGGTTTGCTCGCATTGTCGTTCATCCAGAAC
rJMSF036M02+          GCATTGGCTCACCCTTATTTTGACCGAGAAGGTTTGCTCGCATTGTCGTTCATCCAGAAC
rJMFF032H21+          GCATTGGCTCACCCTTATTTTGACCGAGAAGGTTTGCTCGCATTGTCGTTCATCCAGAAC
                      ____________________________________________________________
consensus             GCATTGGCTCACCCTTATTTTGACCGAGAAGGTTTGCTCGCATTGTCGTTCATCCAGAAC
 
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JMFN029F09-           CTAAAGCTGCAGTTCTTTAGAGCAACACAGCATGATTACAGTGAAGCTGCAAAGTGGGTT
rJMSF036M02+          CTAAAGCTGCAGTTCTTTAGAGCAACACAGCAGGATTACAGTGAAGCTGCAAAGTGGGTT
rJMFF032H21+          CTAAAGCTGCAGTTCTTTAGAGCAACACAGCAGGATTACAGTGAAGCTGCAAAGTGGGTT
                      ____________________________________________________________
consensus             CTAAAGCTGCAGTTCTTTAGAGCAACACAGCAGGATTACAGTGAAGCTGCAAAGTGGGTT
 
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JMFN029F09-           ATTCAGCTAATGGCAAAGTCAGGAACACAGAAAGATGGAGGCTTCACTGAAGCTCAACTA
rJMSF036M02+          ATTCAGCTAATGGCAAAGTCAGGAACACAGAAAGATGGAGGCTTCACTGAAGCTCAACTA
rJMFF032H21+          ATTCAGCTAATGGCAAAGTCAGGAACACAGAAAGATGGAGGCTTCACTGAAGCTCAACTA
                      ____________________________________________________________
consensus             ATTCAGCTAATGGCAAAGTCAGGAACACAGAAAGATGGAGGCTTCACTGAAGCTCAACTA
 
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JMFN029F09-           CAGGAGTTTAGGGAAATAAAGCCTAAGAAGAAATCAAGTGCACAAAGAAATGCTCTGGCA
rJMSF036M02+          CAGGAGTTTAGGGAAATAAAGCCTAAGAAGAAATCAAGTGCACAAAGAAATGCTCTGGCA
rJMFF032H21+          CAGGAGTTTAGGGAAATAAAGCCTAAGAAGAAATCAAGTGCACAAAGAAATGCTCTGGCA
                      ____________________________________________________________
consensus             CAGGAGTTTAGGGAAATAAAGCCTAAGAAGAAATCAAGTGCACAAAGAAATGCTCTGGCA
 
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JMFN029F09-           TCCGCACTCCGGCTTCAGAGAAAGATCATAAAAACAATTAATGAGAGTATTGACGAGCTG
rJMSF036M02+          TCCGCACTCCGGCTTCAGAGAAAGATCATAAAAACAATTAATGAGAGTATTGACGAGCTG
rJMFF032H21+          TCCGCACTCCGGCTTCAGAGAAAGATCATAAAAACAATTAATGAGAGTATTGACGAGCTG
                      ____________________________________________________________
consensus             TCCGCACTCCGGCTTCAGAGAAAGATCATAAAAACAATTAATGAGAGTATTGACGAGCTG
 
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JMFN029F09-           AATCAAAGAAGGAAAAGCCTATGGTGGAGCAAATGGATTCCAAGAGAAGAATGAANACCT
rJMSF036M02+          AATCAAAGAAGGAAAAGCCTATGGTGGAGCAAATGGATTCCAAGAGAAGAATGAAACCTG
rJMFF032H21+          AATCAAAGAAGGAAAAGCCTATGGTGGAGCAAATGGATTCCAAGAGAAGAATGAAACCTG
                      ____________________________________________________________
consensus             AATCAAAGAAGGAAAAGCCTATGGTGGAGCAAATGGATTCCAAGAGAAGAATGAAACCTG
 
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JMFN029F09-           GTAATATATACAGAATTGCTTTCACTTTTCTTGTTAATCACTGCCTAATTTGACCAT   
rJMSF036M02+          TAAATATATACAGAATTGCTTTCACTTTTCTTGTTAATCACTGCCTAATTTGACCATAAA
rJMFF032H21+          TAAATATATACAGAATTGCTTTCACTTTTCTTGTTAATCACTGCCTAATTTGACCATAAA
                      ____________________________________________________________
consensus             TAAATATATACAGAATTGCTTTCACTTTTCTTGTTAATCACTGCCTAATTTGACCATAAA
 
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rJMSF036M02+          ATAGAGATATATGTTAAAGAAAAGTTTATTTTAAAAATCACT                  
rJMFF032H21+          ATAGAGATATATGTTAAAGAAAAGTTTATTTTAAAAATCACTTATAATTGTGATCAATCA
                      ____________________________________________________________
consensus             ATAGAGATATATGTTAAAGAAAAGTTTATTTTAAAAATCACTTATAATTGTGATCAATCA