Contig 012348:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032D11Sequence536012348 (4)ref|XP_004238305.1|9e-50PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Sola716012348 (4)ref|XP_002510457.1|5e-99ATP-dependent peptidase, putative [Ricinus communis] gb|EEF52644.1| ATP-dependen
JMSF037K17Sequence629012348 (4)ref|XP_004238305.1|8e-63PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Sola702012348 (4)ref|XP_002510457.1|3e-118ATP-dependent peptidase, putative [Ricinus communis] gb|EEF52644.1| ATP-dependen

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF032D11- GAA
JMSF037K17- GGAGATTCTGATTCTCGAA
                      ____________________________________________________________
consensus GGAGATTCTGATTCTCGAA
 
. : . : . : . : . : . :
JMFF032D11- TCCCTTCTTCTCAGATTTCTTCTCCCATGGCTTTACCGCAGTTATTACATCCCACTTCGT
JMSF037K17- TCCCTTCTTCTCAGATTTCTTCTCCCATGGCTTTACCGCAGTTATTACATCCCACTTCGT
                      ____________________________________________________________
consensus TCCCTTCTTCTCAGATTTCTTCTCCCATGGCTTTACCGCAGTTATTACATCCCACTTCGT
 
. : . : . : . : . : . :
JMFF032D11- CTTCTTCGTTAATCTCCCACAAACCCCACTTAAACCCTGCTTTAACCCCTACGCTCGACT
JMSF037K17- CTTCTTCGTTAATCTCCCACAAACCCCACTTAAACCCTGCTTTAACCCCTACGCTCGACT
                      ____________________________________________________________
consensus CTTCTTCGTTAATCTCCCACAAACCCCACTTAAACCCTGCTTTAACCCCTACGCTCGACT
 
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JMFF032D11- TTAACAAGTCGTTATCCGCTTCCTACGCCCTCCATTGCCGCCGCCAGCGGCGGCGCAGCC
JMSF037K17- TTAACAAGTCGTTATCCGCTTCCTACGCCCTCCATTGCCGCCGCCAGCGGCGGCGCAGCC
                      ____________________________________________________________
consensus TTAACAAGTCGTTATCCGCTTCCTACGCCCTCCATTGCCGCCGCCAGCGGCGGCGCAGCC
 
. : . : . : . : . : . :
JMFF032D11- TCACTTCGCTCCGCTGCTCGGCGTCGTCGTTCTCCGAGAAGCACCACACTGGCTCTCCCA
JMSF037K17- TCACTTCGCTCCGCTGCTCGGCGTCGTCGTTCTCCGAGAAGCACCACACTGGCTCTCCCA
                      ____________________________________________________________
consensus TCACTTCGCTCCGCTGCTCGGCGTCGTCGTTCTCCGAGAAGCACCACACTGGCTCTCCCA
 
. : . : . : . : . : . :
JMFF032D11- AATCCGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
JMSF037K17- AATCCGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
rJMSF037K17+ CGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
rJMFF032D11+ CGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
                      ____________________________________________________________
consensus AATCCGATGACGTAGTTGAGCTCCCGCTTTTCCCTTTGCCGTTAGTACTCTTCCCCGGCG
 
. : . : . : . : . : . :
JMFF032D11- CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
JMSF037K17- CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
rJMSF037K17+ CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
rJMFF032D11+ CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
                      ____________________________________________________________
consensus CAATCCTCCCGCTTCAGATCTTCGAGTTCCGGTACCGAATCATGATGCACACTCTGCTGC
 
. : . : . : . : . : . :
JMFF032D11- AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCA-CCGGCGCCGCCGAGGTC
JMSF037K17- AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCA-CCGGCGCCGCCGAGGTC
rJMSF037K17+ AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCA-CCGGCGCCGCCGAGGTC
rJMFF032D11+ AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCACCCGGCGCCGCCGAGGTN
                      ____________________________________________________________
consensus AGACCGATCTCCGATTCGGAGTCATATACTCCGACAGCGCCA-CCGGCGCCGCCGAGGTC
 
. : . : . : . : . : . :
JMFF032D11- GGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
JMSF037K17- GGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
rJMSF037K17+ GGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
rJMFF032D11+ CGGTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
                      ____________________________________________________________
consensus GGCTGCGTCGGGGAGGTGGTGAAGCACGAGCGCCTCGTCGACGACCGCTTCTTCCTAATC
 
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JMFF032D11- TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTAC
JMSF037K17- TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTACTTGGTG
rJMSF037K17+ TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTACTTGGTG
rJMFF032D11+ TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTACTTGGTG
                      ____________________________________________________________
consensus TGTAAAGGCCAGGAGCGGTTCCGGGTCACGAAGCTGGTCCGGACCAAACCCTACTTGGTG
 
. : . : . : . : . : . :
JMSF037K17- GCGGAGGTCACGTGGCTGGAGGACCGACCACGTGACGGGGATGAGGATCTGGATTCGCTG
rJMSF037K17+ GCGGAGGTCACGTGGCTGGAGGACCGACCACGTGACGGGGATGAGGATCTGGATTCGCTG
rJMFF032D11+ GCGGAGGTCACGTGGCTGGAGGACCGACCACGTGACGGGGATGAGGATCTGGATTCGCTG
                      ____________________________________________________________
consensus GCGGAGGTCACGTGGCTGGAGGACCGACCACGTGACGGGGATGAGGATCTGGATTCGCTG
 
. : . : . : . : . : . :
JMSF037K17- GCATCCGAAGT
rJMSF037K17+ GCATCCGAAGTGGAGACGTATATGAAAGACGTGATCCGATTATCCAACAGACTTAACGGC
rJMFF032D11+ GCATCCGAAGTGGAGACGTATATGAAAGACGTGATCCGATTATCCAACAGACTTAACGGC
                      ____________________________________________________________
consensus GCATCCGAAGTGGAGACGTATATGAAAGACGTGATCCGATTATCCAACAGACTTAACGGC
 
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rJMSF037K17+ AAGCCGGAAAAGGAGGCGCAAGATCTGCGGCGGAACCTTTTCCCGACGCCGTTCTCGTTC
rJMFF032D11+ AAGCCGGAAAAGGAGGCGCAAGATCTGCGGCGGAACCTTTTCCCGACGCCGTTCTCGTTC
                      ____________________________________________________________
consensus AAGCCGGAAAAGGAGGCGCAAGATCTGCGGCGGAACCTTTTCCCGACGCCGTTCTCGTTC
 
. : . : . : . : . : . :
rJMSF037K17+ TTCGTCGGAAGCACGTTCGAAGGCGCGCCCAGAGAACAGCAGGCGTTGCTGGAGCTGGAA
rJMFF032D11+ TTCGTCGGAAGCACGTTCGAAGGCGCGCCCAGAGAACAGCAGGCGTTGCTGGAGCTGGAA
                      ____________________________________________________________
consensus TTCGTCGGAAGCACGTTCGAAGGCGCGCCCAGAGAACAGCAGGCGTTGCTGGAGCTGGAA
 
. : . : . : . : . : . :
rJMSF037K17+ GACACGGCCATGCGGCTAAAAAGGGAGAAGGAGACATTGCGGAACACTTTGAATTACTTG
rJMFF032D11+ GACACGGCCATGCGGCTAAAAAGGGAGAAGGAGACATTGCGGAACACTTTGAATTACTTG
                      ____________________________________________________________
consensus GACACGGCCATGCGGCTAAAAAGGGAGAAGGAGACATTGCGGAACACTTTGAATTACTTG
 
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rJMSF037K17+ TCAGCCGCCTCTGCTGTCAAAGATGTGTTCCCATCTTCATGAAATACGGGTGAGTTTTGG
rJMFF032D11+ TCAGCCGCCTCTGCTGTCAAAGATGTGTTCCCATCTTCATGAAATACGGGTGAGTTTTGG
                      ____________________________________________________________
consensus TCAGCCGCCTCTGCTGTCAAAGATGTGTTCCCATCTTCATGAAATACGGGTGAGTTTTGG
 
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rJMSF037K17+ TGCCCCACAGGTATTATAAGTGTTTCTGTAATCTATACTAT
rJMFF032D11+ TGCCCCACAGGTATTATAAGTGTTTCTGTAATCTATACTATGAACTTGTAAATTTTGATG
                      ____________________________________________________________
consensus TGCCCCACAGGTATTATAAGTGTTTCTGTAATCTATACTATGAACTTGTAAATTTTGATG