| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027D02 | Sequence | 556 | 000684 (5) | gb|KHG00634.1| | 2e-108 | hypothetical protein F383_17905 [Gossypium arboreum] | 783 | 012322 (4) | gb|KHN44106.1| | 2e-107 | Elongation factor G, mitochondrial [Glycine soja] |
| JMSF015L04 | Sequence | 455 | 000684 (5) | ref|XP_006347922.1| | 1e-63 | PREDICTED: elongation factor G 2, mitochondrial-like [Solanum tuberosum] | 747 | 012322 (4) | gb|KHN44106.1| | 8e-99 | Elongation factor G, mitochondrial [Glycine soja] |
| JMSF023F22 | Sequence | 625 | 000684 (5) | ref|XP_006347922.1| | 2e-111 | PREDICTED: elongation factor G 2, mitochondrial-like [Solanum tuberosum] | 734 | 012322 (4) | gb|KHN44106.1| | 8e-104 | Elongation factor G, mitochondrial [Glycine soja] |
| JMSF034P23 | Sequence | 665 | 000684 (5) | ref|XP_006347922.1| | 1e-115 | PREDICTED: elongation factor G 2, mitochondrial-like [Solanum tuberosum] | 640 | 012322 (4) | gb|KHN44106.1| | 5e-85 | Elongation factor G, mitochondrial [Glycine soja] |
This contig is upended
. : . : . : . : . : . :
rJMSF015L04+ TTGAATTCGATAACA
rJMFF027D02+ AACA
____________________________________________________________
consensus TTGAATTCGATAACA
. : . : . : . : . : . :
rJMSF015L04+ TCATTGTAGGACAGGCTATACCATCAAACTTTATTCCCAGCAATTGAGAAGGGCTTTAAG
rJMSF023F22+ TCCCAGCAATTGAGAAGGGCTTTAAG
rJMFF027D02+ TCATNGTAGGACAGGCTATACCATCAAACTTTA-TCCCAGCAATTGAGAAGGGCTTTAAG
____________________________________________________________
consensus TCATTGTAGGACAGGCTATACCATCAAACTTTATTCCCAGCAATTGAGAAGGGCTTTAAG
. : . : . : . : . : . :
rJMSF034P23+ ACCCAGTTGAGAATATTCGTGTTGTTTTG
rJMSF015L04+ GAGGCTGCTAACTCGGGTTCACTGATTGGCCACCCAGTTGAGAATATTCGTGTTGTTTTG
rJMSF023F22+ GAGGCTGCTAACTCGGGTTCACTGATTGGCCACCCAGTTGAGAATATTCGTGTTGTTTTG
rJMFF027D02+ GAGGCTGCTAACTCGGGTTCACTGATTGGCCACCCAGTTGAGAATATTCGTGTTGTTTTG
____________________________________________________________
consensus GAGGCTGCTAACTCGGGTTCACTGATTGGCCACCCAGTTGAGAATATTCGTGTTGTTTTG
. : . : . : . : . : . :
rJMSF034P23+ ACGGATGGTGCTTCACATGCTGTTGATTCAAGTGAACTTGCATTCAAACTAGCAGCAATC
rJMSF015L04+ ACGGATGGTGCTTCACATGCTGTTGATTCAAGTGAACTTGCATTCAAACTAGCAGCAATC
rJMSF023F22+ ACGGATGGTGCTTCACATGCTGTTGATTCAAGTGAACTTGCATTCAAACTAGCAGCAATC
rJMFF027D02+ ACGGATGGTGCTTCACATGCTGTTGATTCAAGTGAACTTGCATTCAAACTAGCAGCAATC
____________________________________________________________
consensus ACGGATGGTGCTTCACATGCTGTTGATTCAAGTGAACTTGCATTCAAACTAGCAGCAATC
. : . : . : . : . : . :
rJMSF034P23+ TATGCCTTTAGACAGTGTTATTCAGCAGCCCGGCCTATCATATTGGAACCTGTGATGCTT
rJMSF015L04+ TATGCCTTTAGACAGTGTTATTCAGCAGCCCGGCCTATCATATTGGAACCTGTGATGCTT
rJMSF023F22+ TATGCCTTTAGACAGTGTTATTCAGCAGCCCGGCCTATCATATTGGAACCTGTGATGCTT
rJMFF027D02+ TATGCCTTTAGACAGTGTTATTCAGCAGCCCGGCCTATCATATTGGAACCTGTGATGCTT
____________________________________________________________
consensus TATGCCTTTAGACAGTGTTATTCAGCAGCCCGGCCTATCATATTGGAACCTGTGATGCTT
. : . : . : . : . : . :
rJMSF034P23+ GTTGAAATCAAAGTACCAACAGAATTTCAGGGCACGGTTACTGGGGATATTAACAAGAGG
rJMSF015L04+ GTTGAAATCAAAGTACCAACAGAATTTCAGGGCACGGTTACTGGGGATATTAACAAGAGG
rJMSF023F22+ GTTGAAATCAAAGTACCAACAGAATTTCAGGGCACGGTTACTGGGGATATTAACAAGAGG
rJMFF027D02+ GTTGAAATCAAAGTACCAACAGAATTTCAGGGCACGGTTACTGGGGATATTAACAAGAGG
____________________________________________________________
consensus GTTGAAATCAAAGTACCAACAGAATTTCAGGGCACGGTTACTGGGGATATTAACAAGAGG
. : . : . : . : . : . :
rJMSF034P23+ AAAGGTGTCATTGTTGGGAATGACCAGGAAGGAGACGACTCTGTCATCACTGCTCATGTT
rJMSF015L04+ AAAGGTGTCATTGTTGGGAATGACCAGGAAGGAGACGACTCTGTCATCACTGCTCATGTT
rJMSF023F22+ AAAGGTGTCATTGTTGGGAATGACCAGGAAGGAGACGACTCTGTCATCACTGCTCATGTT
rJMFF027D02+ AAAGGTGTCATTGTTGGGAATGACCAGGAAGGAGACGACTCTGTCATCACTGCTCATGTT
____________________________________________________________
consensus AAAGGTGTCATTGTTGGGAATGACCAGGAAGGAGACGACTCTGTCATCACTGCTCATGTT
. : . : . : . : . : . :
rJMSF034P23+ CCTCTCAATAATATGTTCGGGTACTCAACTTCTCTTCGGTCAATGACACAGGGTAAAGGA
rJMSF015L04+ CCTCTCAATAATATGTTCGGGTACTCAACTTCTCTTCGGTCAATGACACAGGGTAAAGGA
rJMSF023F22+ CCTCTCAATAATATGTTCGGGTACTCAACTTCTCTTCGGTCAATGACACAGGGTAAAGGA
rJMFF027D02+ CCTCTCAATAATATGTTCGGGTACTCAACTTCTCTTCGGTCAATGACACAGGGTAAAGGA
____________________________________________________________
consensus CCTCTCAATAATATGTTCGGGTACTCAACTTCTCTTCGGTCAATGACACAGGGTAAAGGA
. : . : . : . : . : . :
rJMSF034P23+ GAATTCACAATGGAGTACAAAGAACATTCAGCAGTTTCCCACGATGTGCAAACACAACTG
rJMSF015L04+ GAATTCACAATGGAGTACAAAGAACATTCAGCAGTTTCCCACGATGTGCAAACACAACTG
rJMSF023F22+ GAATTCACAATGGAGTACAAAGAACATTCAGCAGTTTCCCACGATGTGCAAACACAACTG
rJMFF027D02+ GAATTCACAATGGAGTACAAAGAACATTCAGCAGTTTCCCACGATGTGCAAACACAACTG
____________________________________________________________
consensus GAATTCACAATGGAGTACAAAGAACATTCAGCAGTTTCCCACGATGTGCAAACACAACTG
. : . : . : . : . : . :
rJMSF034P23+ GTTAACGCATACAAGGCCACCAAAGGAACCGAATAGATAGAGTGGTTTTCAAGTGCCTAC
rJMSF015L04+ GTTAACGCATACAAGGCCACCAAAGGAACCGAATAGATAGAGTGGTTTTCAAGTGCCTAC
rJMSF023F22+ GTTAACGCATACAAGGCCACCAAAGGAACCGAATAGATAGAGTGGTTTTCAAGTGCCTNC
rJMFF027D02+ GTTAACGCATACAAGGCCACCAAAGGAACCGAATAGATAGAGTGGTTTTCAAGTGCCTAC
____________________________________________________________
consensus GTTAACGCATACAAGGCCACCAAAGGAACCGAATAGATAGAGTGGTTTTCAAGTGCCTAC
. : . : . : . : . : . :
rJMSF034P23+ CTTTCATTCTTTGCCAGAACCATATATTGCTCTAGGTGGATTTATAACAATTTAGAGTTT
rJMSF015L04+ CTTTCATTCTTTGCCAGAACCATATATTGCTCTAGGTGGATTTATAACAATTTAGAGTTT
rJMSF023F22+ CTTTCATTCTTTGCCAGAACCATATATTGCTCTAGGTGGATTTATAACAATTTAGAGTTT
rJMFF027D02+ CTTTCATTCTTTGCCAGAACCATATATTGCTCTAGGTGGATTTATAACAATTTAGAGTTT
____________________________________________________________
consensus CTTTCATTCTTTGCCAGAACCATATATTGCTCTAGGTGGATTTATAACAATTTAGAGTTT
. : . : . : . : . : . :
rJMSF034P23+ GGGACCGAAATATGGTCTATGAATTTTGATAACATGTCCAAAATATATCCTTCTTTTTAT
rJMSF015L04+ GGGACCGAAATATGGTCTATGAATTTTGATAACATGTCCAAAATATATCCTTCTTTTTAT
rJMSF023F22+ GGGACCGAAATATGGTCTATGAATTNTGATAACATGTCCAAAATATATCCTTCTTTTTAT
rJMFF027D02+ GGGACCGAAATATGGTCTATGAATTTTGATAACATGTCCAAAATATATCCTTCTTTTTAT
____________________________________________________________
consensus GGGACCGAAATATGGTCTATGAATTTTGATAACATGTCCAAAATATATCCTTCTTTTTAT
. : . : . : . : . : . :
rJMSF034P23+ TTATATTATAATGATCATGAATCAAACTTTTAAAGATTCATGTATACAGCAGATGTATGC
rJMSF015L04+ TTATATTATAATGATCATGAATCAAACTTTTAAAGATTCATGTATACAGCAGATGTATGC
rJMSF023F22+ TTATATTATAATGATCATGAATCAAACTTTTAAAGATTCATGTATACAGCAGATGTATGC
rJMFF027D02+ TTATATTATAATGATCATGAATCAAACTTTTAAAGATTCATGTATACAGCAGATGTATGC
____________________________________________________________
consensus TTATATTATAATGATCATGAATCAAACTTTTAAAGATTCATGTATACAGCAGATGTATGC
. : . : . : . : . : . :
rJMSF034P23+ AGCTACTGTAC
rJMSF015L04+ AGCTACTGTAC
rJMSF023F22+ AGCTACTGTACTATAAA
rJMFF027D02+ AGCTACTGTACTATAAACAGGGTGATTCATATAACAAGATAATTCAAAATAAAAACAACT
____________________________________________________________
consensus AGCTACTGTACTATAAACAGGGTGATTCATATAACAAGATAATTCAAAATAAAAACAACT