Contig 012316:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003C20Sequence593012810 (5)gb|KDO85584.1|2e-52hypothetical protein CISIN_1g014800mg [Citrus sinensis]715012316 (5)ref|XP_002275918.1|3e-54PREDICTED: dnaJ protein homolog 2 [Vitis vinifera]
JMFF008B06Sequence781012316 (5)emb|CDP09461.1|4e-104unnamed protein product [Coffea canephora]
JMFF025P20Sequence444012810 (5)gb|KDO85584.1|2e-53hypothetical protein CISIN_1g014800mg [Citrus sinensis]818012316 (5)emb|CDP09461.1|2e-83unnamed protein product [Coffea canephora]
JMFF047O06Sequence435012810 (5)gb|KDO85584.1|2e-53hypothetical protein CISIN_1g014800mg [Citrus sinensis]284012316 (5)
JMSF048J17Sequence700012810 (5)gb|KDO85584.1|3e-79hypothetical protein CISIN_1g014800mg [Citrus sinensis]759012316 (5)emb|CDP09461.1|1e-101unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF008B06+                                                                   CCT
                      ____________________________________________________________
consensus                                                                      CCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+                  AGGATCAGGTGAGGCCATAAGTGAAAGAGACAAATGTACACAGTGCAAAGGA
rJMFF008B06+          GATTGCCGAGGATCAGGTGAGGCCATAAGTGAAAGAGACAAATGTACNCAGTGCAAAGGA
                      ____________________________________________________________
consensus             GATTGCCGAGGATCAGGTGAGGCCATAAGTGAAAGAGACAAATGTACACAGTGCAAAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          AGCAAGGTTACCCAAGAAAAGAAAGTGCTGGAAGTGAATGTCGAGAAGGGGATGCAAAAT
rJMFF008B06+          AGCAAGGTTACCCAAGAAAAGAAAGTGCTGGAAGTGAATGTCGAGAAGGGGATGCAAAAT
rJMFF025P20+                                AAGTGCTGNAAGTGAATGTCGAGAAGGGGATGCAAAAT
                      ____________________________________________________________
consensus             AGCAAGGTTACCCAAGAAAAGAAAGTGCTGGAAGTGAATGTCGAGAAGGGGATGCAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          GGTGAAAAGATAGTATTTACTGGGGAAGCAGATGAGGCACCCGATACCATTGCTGGGGAT
rJMFF008B06+          GGTGAAAAGATAGTATTTACTGGGGAAGCAGATGAGGCACCCGATACCATTGCTGGGGAT
rJMFF003C20+                                                           TTGCTGGGGAT
rJMFF025P20+          GGTGAAAAGATAGTATTTACTGGGGAAGCAGATGAGGCACCCGATACCATTGCTGGGGAT
                      ____________________________________________________________
consensus             GGTGAAAAGATAGTATTTACTGGGGAAGCAGATGAGGCACCCGATACCATTGCTGGGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          ATTGTTTTCGTGGTACAGCAGAGGGAACACCCCAAGTTCAAGCGGAAGTTCGATGATCTC
rJMFF008B06+          ATTGTTTTCGTGGTACAGCAGAGGGAACACCCCAAGTTCAAGCGGAAGTTCGATGATCTC
rJMFF003C20+          ATTGTTTTCGTGGTACAGCAGAGGGAACACCCCAAGTTCAAGCGGAAGTTCGATGATCTC
rJMFF025P20+          ATTGTTTTCGTGGTACAGCAGAGGGAACACCCCAAGTTCAAGCGGAAGTTCGATGATCTC
                      ____________________________________________________________
consensus             ATTGTTTTCGTGGTACAGCAGAGGGAACACCCCAAGTTCAAGCGGAAGTTCGATGATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          TATATGGAGCACACCCTCAGTTTAACCGAAGCTCTTTGTGGCTTTCAGTTCGTCATAACT
rJMFF008B06+          TATATGGAGCACACCCTCAGTTTAACCGAAGCTCTTTGTGGCTTTCAGTTCGTCATAACT
rJMFF003C20+          TATATGGAGCACACCCTCAGTTTAACCGAAGCTCTTTGTGGCTTTCAGTTCGTCATAACT
rJMFF025P20+          TATATGGAGCACACCCTCAGTTTAACCGAAGCTCTTTGTGGCTTTCAGTTCGTCATAACT
                      ____________________________________________________________
consensus             TATATGGAGCACACCCTCAGTTTAACCGAAGCTCTTTGTGGCTTTCAGTTCGTCATAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          CATCTCGATGGCAGGCAGCTTCTAATCAAATCAGGACCCGGCGAAGTTATTAAGCCCGAT
rJMFF008B06+          CATCTCGATGGCAGGCAGCTTCTAATCAAATCAGGACCCGGCGAAGTTATTAAGCCCGAT
rJMFF003C20+          CATCTCGATGGCAGGCAGCTTCTAATCAAATCAGGACCCGGCGAAGTTATTAAGCCCGAT
rJMFF025P20+          CATCTCGATGGCAGGCAGCTTCTAATCAAATCAGGACCCGGCGAAGTTATTAAGCCCGAT
                      ____________________________________________________________
consensus             CATCTCGATGGCAGGCAGCTTCTAATCAAATCAGGACCCGGCGAAGTTATTAAGCCCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          CAATCCAAGGCAATAAACGACGAGGGAATGCCACACCACGAAAGGCCGTTCATGAAGGGC
rJMFF008B06+          CAATCCAAGGCAATAAACGACGAGGGAATGCCACACCACGAAAGGCCGTTCATGAAGGGC
rJMFF003C20+          CAATCCAAGGCAATAAACGACGAGGGAATGCCACACCACGAAAGGCCGTTCATGAAGGGC
rJMFF025P20+          CAATCCAAGGCAATAAACGACGAGGGAATGCCACACCACGAAAGGCCGTTCATGAAGGGC
                      ____________________________________________________________
consensus             CAATCCAAGGCAATAAACGACGAGGGAATGCCACACCACGAAAGGCCGTTCATGAAGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          CGCTTGTACATCAATTTTGACGTGGAATTTCCCGAGCCCGGGGCTCTTTCCCCCGAGGCA
rJMFF008B06+          CGCTTGTACATCAATTTTGACGTGGAATTTCCCGAGCCCGGGGCTCTTTCCCCCGAGGCA
rJMFF003C20+          CGCTTGTACATCAATTTTGACGTGGAATTTCCCGAGCCCGGGGCTCTTTCCCCCGAGGCA
rJMFF025P20+          CGCTTGTACATCAATTTTGACGTGGAATTTCCCGAGCCCGGGGCTCTTTCCCCCGAGGCA
                      ____________________________________________________________
consensus             CGCTTGTACATCAATTTTGACGTGGAATTTCCCGAGCCCGGGGCTCTTTCCCCCGAGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          TGCCGCGCCCTGGAGACTCTCCTGCCACCGAAACCGAGTCCGTCCTCGTTACCCGTCAAC
rJMFF008B06+          TGCCGCGCCCTGGAGACTCTCCTGCCACCGAAACCGAGTCCGTCCTCGTTACCCGTCAAC
rJMFF047O06+                                              AGTCCGTCCTCGTTACCCGTCAAC
rJMFF003C20+          TGCCGCGCCC-GGAGACTCTCCTGCCACCGAAACCGAGTCCGTCCTCGTTACCCGTCAAC
rJMFF025P20+          TGCCGCGCCCTGGAGACTCTCCTGCCACCGAAACCGAGTCCGTCCTCGTTACCCGTCAAC
                      ____________________________________________________________
consensus             TGCCGCGCCCTGGAGACTCTCCTGCCACCGAAACCGAGTCCGTCCTCGTTACCCGTCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          CTCGATGAGTGCGAGGAAACGACGTTGCAGGACGTGAACATCGAGGAAGAAATGAGGCGC
rJMFF008B06+          CTCGATGAGTGCGAGGAAACGACGTTGCAGGACGTGAACATCGAGGAAGAAATGAGGCGC
rJMFF047O06+          CTCGATGAGTGCGAGGAAACGACGTTGCAGGACGTGAACATCGAGGAAGAAATGAGGCGC
rJMFF003C20+          CTCGATGAGTGCGAGGAAACGACGTTGCAGGACGTGAACATCGAGGAAGAAATGAGGCGC
rJMFF025P20+          CTCGATGAGTGCGAGGAAACGACGTTGCAGGACGTGAACATCGAGGAAGAAATGAGGCGC
                      ____________________________________________________________
consensus             CTCGATGAGTGCGAGGAAACGACGTTGCAGGACGTGAACATCGAGGAAGAAATGAGGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          AAGGAGCAGCAGAGGCAACAAGAGGCTTACGATTCGGATGACGATTCGTCTTCAGATGTG
rJMFF008B06+          AAGGAGCAGCAGAGGCAACAAGAGGCTTACGATTCGGATGACGATTCGTCTTCAGATGTG
rJMFF047O06+          AAGGAGCAGCAGAGGCAACAAGAGGCTTACGATTCGGATGACGATTCGTCTTCAGATGTG
rJMFF003C20+          AAGGAGCAGCAGAGGCAACAAGAGGCTTACGATTCGGATGACGATTCGTCTTCAGATGTG
rJMFF025P20+          AAGGAGCAGCAGAGGCAACAAGAGGCTTACGATTCGGATGACGATTCGTCTTCAGATGTG
                      ____________________________________________________________
consensus             AAGGAGCAGCAGAGGCAACAAGAGGCTTACGATTCGGATGACGATTCGTCTTCAGATGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          CACCGCGTGGCATGCAACCAGCAGTAGTAAGGCGGCTCGGAGTCTGCCGATTTGCATATC
rJMFF008B06+          CACCGCGTGGCATGCAACCAGCAGTAGTAAGGCGGCTCGGAGTCTGCCGATTTGCATATC
rJMFF047O06+          CACCGCGTGGCATGCAACCAGCAGTAGTAAGGCGGCTCGGAGTCTGCCGATTTGCATATC
rJMFF003C20+          CACCGCGTGGCATGCAACCAGCAGTAGTAAGGCGGCTCGGAGTCTGCCGATTTGCATATC
rJMFF025P20+          CACCGCGTGGCATGCAACCAGCAGTAGTAAGGCGGCTCGGAGTCTGCCGATTTGCATATC
                      ____________________________________________________________
consensus             CACCGCGTGGCATGCAACCAGCAGTAGTAAGGCGGCTCGGAGTCTGCCGATTTGCATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048J17+          TAGCCTAGTGTATTTTTGTTATGGTCATTTGGGATATGTATAAGTAT             
rJMFF008B06+          TAGCCTAGTGTATTTTTGTTATGGTCATTTGGGATATGTATAAGTATTATTATTGCTT  
rJMFF047O06+          TAGCCTAGGGTATTTTTGTTATGGTCATTTGGGATATGTATAAGTATTATTATTGCTTTT
rJMFF003C20+          TAGCCTAGTGTATTTTTGTTATGGTCATTTGGGATATGTATAAGTATTATTATTGCTTTT
rJMFF025P20+          TAGCCTAGTGTATTTTTGTTATGGTCATTTGGGATATGTATAAGTATTATTATTGCTTTT
                      ____________________________________________________________
consensus             TAGCCTAGTGTATTTTTGTTATGGTCATTTGGGATATGTATAAGTATTATTATTGCTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF047O06+          TCATTTGCATTTTGAAGTTT                                        
rJMFF003C20+          TCATTTGCATTTTGAAGTTTATCACTACTACGAGGTTTTTTATTTGTATTTTTTGCCTGA
rJMFF025P20+          TCATTTGCATTTTGAAGTTTATCACTACTACGAGGTTTTTTATTTGTATTTTTTGCCTGA
                      ____________________________________________________________
consensus             TCATTTGCATTTTGAAGTTTATCACTACTACGAGGTTTTTTATTTGTATTTTTTGCCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003C20+          NTGCGTGAGNTATCTCATACCATTCTTAACTCTATTGTATGCAA                
rJMFF025P20+          TTGCGTGAGTTATCTCATACCATTCTTAACTCTATTGTATGCAATGTTAAGGAGGAAAAG
                      ____________________________________________________________
consensus             TTGCGTGAGTTATCTCATACCATTCTTAACTCTATTGTATGCAATGTTAAGGAGGAAAAG