This contig is upended
. : . : . : . : . : . :
rJMFF047M11- CC
____________________________________________________________
consensus CC
. : . : . : . : . : . :
JMCP009D06+ TACCAAA
rJMFF047K23- GCAACCCTTATTCCTACCAAA
rJMFF047M11- TTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGCAACCCTTATTCCTACCAAA
rJMFF033K12- A
____________________________________________________________
consensus TTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGCAACCCTTATTCCTACCAAA
. : . : . : . : . : . :
JMCP009D06+ TCTTATTGGTTATAATTCACTGATAAATCGAAACAAAGAACTTTATTAAATACAATTAAG
JMCP003C08+ AATCGAAACAAAGAACTTTATTAAATACAATTAAG
JMCP013F03+ TTTATTAAATACAATTAAG
rJMFF047K23- TCTTATTGGTTATAATTCATTGATAAATCGAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011C02+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011F10+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011G04+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011A07+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011D03+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011F06+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011G09+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011B07+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011G10+ ATTAAATACAATTAAG
JMCP013D01+ AAACAAAGAACTTTATTAAATACAATTAAG
JMCP013E01+ CAAAGAACTTTATTAAATACAATTAAG
JMCP012E07+ AATACAATTAAG
JMCP011D08+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011H08+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011D02+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011F02+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP004A06+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011C01+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011G01+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP012A06+ TAAATACAATTAAG
JMCP012C04+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP013B01+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011H09+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011H12+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011G02+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP013A09+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP013E04+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP013H08+ GAAACAAAGAAgaaTATTAAATACAATTAAG
JMCP011D09+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP011H11+ GAAACAAAGAACTTTATTAAATACAATTAAG
JMCP013G06+ AAACAAAGAACTTTATTAAATACAATTAAG
rJMFF047M11- TCTTATTGGTTATAATTCATTGATAAATCGAAACAAAGAACTTTATTAAATACAATTAAG
rJMFF033K12- TCTTATTGGTTATAATTCATTGATAAATCGAAACAAAGAACTTTATTAAATACAATTAAG
rJMFF002F10- ATTAAG
rJMFF028D13- TTAAG
rJMFF003F16- ATTAAG
rJMFF013N03- ATTAAG
rJMFF024G08- ATTAAG
rJMFF017D23- ATTAAG
____________________________________________________________
consensus TCTTATTGGTTATAATTCATTGATAAATCGAAACAAAGAACTTTATTAAATACAATTAAG
. : . : . : . : . : . :
JMCP009D06+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
JMCP003C08+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
JMCP013F03+ CGTTCtaagAGAGTTTATGATTACAGTTCTCAacAAACACAAGGCATCTCTGCAGCTACG
rJMFF047K23- CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
JMCP011C02+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011F10+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011G04+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011A07+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011D03+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011F06+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011G09+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011B07+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011G10+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP013D01+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAcgaACG
JMCP013E01+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGcgCTCTCTGCAGCTACG
JMCP012E07+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011D08+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011H08+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011D02+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011F02+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP004A06+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011C01+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011G01+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP012A06+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCActatgG
JMCP012C04+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP013B01+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011H09+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011H12+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCagacCAcgaACG
JMCP011G02+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP013A09+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP013E04+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCaCTCTGCAGCTACG
JMCP013H08+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011D09+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
JMCP011H11+ CGTTCATTCAGGGTTTATGATTACAGTTgaCATGAAAgACAAGGCCTCagaGCAcgaACG
JMCP013G06+ CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAcCTACG
rJMFF047M11- CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
rJMFF033K12- CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
rJMFF002F10- CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
rJMFF028D13- CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
rJMFF003F16- CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
rJMFF013N03- CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
rJMFF024G08- CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
rJMFF017D23- CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCTTCTCTGCAGCTACG
____________________________________________________________
consensus CGTTCATTCAGGGTTTATGATTACAGTTCTCATGAAACACAAGGCCTCTCTGCAGCTACG
. : . : . : . : . : . :
JMCP009D06+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP003C08+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP013F03+ CGTGTGAACAACCCTCTCTATCTGCCACTGAA
rJMFF047K23- CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011C02+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011F10+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011G04+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011A07+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011D03+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011F06+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011G09+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011B07+ CGTGTGAACAACCCTCTCTATCTGTCACTGAATTCAAGCTTTCAAATAATATTTCCAATG
JMCP011G10+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP013D01+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACA
JMCP013E01+ CGTGTGAACAACCCTCTCTATCTGCgtgTGAATTCAAGC
JMCP012E07+ CGTGTGAACAACCCTCTCTATCTGCCACTGAAT
JMCP011D08+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011H08+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011D02+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011F02+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP004A06+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011C01+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP011G01+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
JMCP012A06+ CGTGTGAACAACCCTCTCTATCTcggtggctttttctcgaTTCAAATAACATTTCCAATG
JMCP012C04+ CGTGTGAACAACCCTCTCTATCTGCCACTctttagttGCTTTCAAATAACATTTCCAATG
JMCP013B01+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCA
JMCP011H09+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCC
JMCP011H12+ CGTGTGAACAACCCTCTCTATCTGCCtCTGAATTCttcCTTTCAAATAACATTTCC
JMCP011G02+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTT
JMCP013A09+ CGTGTGAACAACCCTCTCTATCTGCCACTcAtaagtAGCTTTCAAATAACATT
JMCP013E04+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATT
JMCP013H08+ CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACAT
JMCP011D09+ CGTGTGAACAACCCTCTCTATCTGCCtgaGAATTCAAGCTTTCAAAT
JMCP011H11+ CGTGTGAACAACCCTCTgatagacggtgacttTTCAAGCTTTCAA
JMCP013G06+ CGTGTGAACAACCCTCTCTATCaagCACTGAATTCAAGCTTTCAA
rJMFF047M11- CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
rJMFF033K12- CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
rJMFF002F10- CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
rJMFF028D13- CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
rJMFF003F16- CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
rJMFF013N03- CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
rJMFF024G08- CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
rJMFF017D23- CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
____________________________________________________________
consensus CGTGTGAACAACCCTCTCTATCTGCCACTGAATTCAAGCTTTCAAATAACATTTCCAATG
. : . : . : . : . : . :
JMCP009D06+ GACTCCAACTCAAGAAAGCCagaGACAATT
JMCP003C08+ GACTCCAACTCAAGAAAGCCTCTGACAATT
rJMFF047K23- GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCCGGAAACGCAACTGCTTCGGCCA
JMCP011C02+ GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCGTTGA
JMCP011F10+ GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCGTTGA
JMCP011G04+ GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCGTTGA
JMCP011A07+ GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCGTT
JMCP011D03+ GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCG
JMCP011F06+ GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCG
JMCP011G09+ GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCG
JMCP011B07+ GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCG
JMCP011G10+ GACTCCAACTCAActttcggagTGACAATTACTCT
JMCP011D08+ GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCGTTGA
JMCP011H08+ GACTCCAACTCAAGAAAGCCTCTGACAATT
JMCP011D02+ GACTCCAACTCAAGAAAGCCTCTGACAATT
JMCP011F02+ GACTCCAACTCAAGAAAGCCTCTGACAATT
JMCP004A06+ GACTCCAACTCAAGAAAGCCTCTGACAATT
JMCP011C01+ GACTCCAACTCAAGAAAGCCTCTGACAATT
JMCP011G01+ GACTCCAACTCAAGAAAGCCTCTGACAATT
JMCP012A06+ G
JMCP012C04+ GACT
rJMFF047M11- GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCCGGAAACGCAACTGCTTCGGCCA
rJMFF033K12- GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCCGGAAACGCAACTGCTTCGGCCA
rJMFF002F10- GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCCGGAAACGCAACTGCTTCGGCCA
rJMFF028D13- GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCCGGAAACGCAACTGCTTCGGCCA
rJMFF003F16- GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCCGGAAACGCAACTGCTTCGGCCA
rJMFF013N03- GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCCGGAAACGCAACTGCTTCGGCCA
rJMFF024G08- GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCCGGAAACGCAACTGCTTCGGCCA
rJMFF017D23- GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCCGGAAACGCAACTGCTTCGGCCA
____________________________________________________________
consensus GACTCCAACTCAAGAAAGCCTCTGACAATTACTCTGCGGGAAACGCAACTGCTTCGGCCA
. : . : . : . : . : . :
rJMFF047K23- CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
rJMFF047M11- CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
rJMFF033K12- CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
rJMFF002F10- CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
rJMFF028D13- CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
rJMFF003F16- CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
rJMFF013N03- CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
rJMFF024G08- CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
rJMFF017D23- CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
____________________________________________________________
consensus CCGACCAAAGAGATTCGTCGGCTTCGAGGTACTGCGAATGAGCGGCCGCCAAGAGCGCAG
. : . : . : . : . : . :
rJMFF047K23- CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
rJMFF047M11- CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
rJMFF033K12- CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
rJMFF002F10- CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
rJMFF028D13- CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
rJMFF003F16- CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
rJMFF013N03- CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
rJMFF024G08- CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
rJMFF017D23- CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
____________________________________________________________
consensus CTCCGATACCCGAGCCGTCGTTTGAGTGCTCGATGACGAGGCTCTCGGACGCCTCCCCCA
. : . : . : . : . : . :
rJMFF047K23- GCAGCTCTTTAAGTGTGCTCTCCATACAGTCTCTGAACTTG
rJMFF047M11- GCAGCTCTTTAAGTGTGCTCTCCATACAGTCTCTGAACTTGG
rJMFF033K12- GCAGCTCTNTAAGTGTGCTCTCCATACAGTCTCTGAACTTGGTGTAGTGCTCGAACAGCC
rJMFF002F10- GCAGCTCTTTAAGTGTGCTCTCCATACAGTCTCTGAACTTGGTGTAGTGCTCGAACAGCC
rJMFF028D13- GCAGCTCTTTAAGTGTGCTCTCCATACAGTCTCTGAACTTGGTGTAGTGCTCGAACAGCC
rJMFF003F16- GCAGCTCTTTAAGTGTGCTCTCCATACAGTCTCTGAACTTGGTGTAGTGCTCGAACAGCC
rJMFF013N03- GCAGCTCTTTAAGTGTGCTCTCCATACAGTCTCTGAACTTGGTGTAGTGCTCGAACAGCC
rJMFF024G08- GCAGCTCTTTAAGTGTGCTCTCCATACAGTCTCTGAACTTGGTGTAGTGCTCGAACAGCC
rJMFF017D23- GCAGCTCTTTAAGTGTGCTCTCCATACAGTCTCTGAACTTGGTGTAGTGCTCGAACAGCC
____________________________________________________________
consensus GCAGCTCTTTAAGTGTGCTCTCCATACAGTCTCTGAACTTGGTGTAGTGCTCGAACAGCC
. : . : . : . : . : . :
rJMFF033K12- CTCCGTCCACTGCCACGACGGATCTCTTGTTGCTCTCCCCCGCCTTCCAACTGTCCCTTC
rJMFF002F10- CTCCGTCCACTGCCACGACGGATCTCTTGTTGCTCTCCCCCGCCTTCCAACTGTCCCTTC
rJMFF028D13- CTCCGTCCACTGCCACGACGGATCTCTTGTTGCTCTCCCCCGCCTTCCAACTGTCCCTTC
rJMFF003F16- CTCCGTCCACTGCCACGACGGATCTCTTGTTGCTCTCCCCCGCCTTCCAACTGTCCCTTC
rJMFF013N03- CTCCGTCCACTGCCACGACGGATCTCTTGTTGCTCTCCCCCGCCTTCCAACTGTCCCTTC
rJMFF024G08- CTCCGTCCACTGCCACGACGGATCTCTTGTTGCTCTCCCCCGCCTTCCAACTGTCCCTTC
rJMFF017D23- CTCCGTCCACTGCCACGACGGATCTCTTGTTGCTCTCCCCCGCCTTCCAACTGTCCCTTC
____________________________________________________________
consensus CTCCGTCCACTGCCACGACGGATCTCTTGTTGCTCTCCCCCGCCTTCCAACTGTCCCTTC
. : . : . : . : . : . :
rJMFF033K12- CCAACTTCTTGAGTATGCCTACGATCCCTGCAGCCGAGAGGCGGGCTGCTCGAGTCGCAA
rJMFF002F10- CCAACTTCTTGAGTATGCCTACGATCCCTGCAGCCGAGAGGCGGGCTGCTCGAGTCGCAA
rJMFF028D13- CCAACTTCTTGAGTATGCCTACGATCCCTGCAGCCGAGAGGCGGGCTGCTCGAGTCGCAA
rJMFF003F16- CCAACTTCTTGAGTATGCCTACGATCCCTGCAGCCGAGAGGCGGGCTGCTCGAGTCGCAA
rJMFF013N03- CCAACTTCTTGAGTATGCCTACGATCCCTGCAGCCGAGAGGCGGGCTGCTCGAGTCGCAA
rJMFF024G08- CCAACTTCTTGAGTATGCCTACGATCCCTGCAGCCGAGAGGCGGGCTGCTCGAGTCGCAA
rJMFF017D23- CCAACTTCTTGAGTATGCCTACGATCCCTGCAGCCGAGAGGCGGGCTGCTCGAGTCGCAA
____________________________________________________________
consensus CCAACTTCTTGAGTATGCCTACGATCCCTGCAGCCGAGAGGCGGGCTGCTCGAGTCGCAA
. : . : . : . : . : . :
rJMFF033K12- CAATGTCGCACACCTCGACCACTACTTTCCGCATTTTCAAGGAAGAGTTGGGTATCTCCA
rJMFF002F10- CAATGTCGCACACCTCGACCACTACTTTCCGCATTTTCAAGGAAGAGTTGGGTATCTCCA
rJMFF028D13- CAATGTCGCACACCTCGACCACTACTTTCCGCATTTTCAAGGAAGAGTTGGGTATCTCCA
rJMFF003F16- CAATGTCGCACACCTCGACCACTACTTTCCGCATTTTCAAGGAAGAGTTGGGTATCTCCA
rJMFF013N03- CAATGTCGCACACCTCGACCACTACTTTCCGCATTTTCAAGGAAGAGTTGGGTATCTCCA
rJMFF024G08- CAATGTCGCACACCTCGACCACTACTTTCCGCATTTTCAAGGAAGAGTTGGGTATCTCCA
rJMFF017D23- CAATGTCGCACACCTCGACCACTGCTTTCCGCATTTTCAAGGAAGAGTTGGGTATCTCCA
____________________________________________________________
consensus CAATGTCGCACACCTCGACCACTACTTTCCGCATTTTCAAGGAAGAGTTGGGTATCTCCA
. : . : . : . : . : . :
rJMFF033K12- AAATATCCTTTAGTTTGTTGCCAACCACCTTCAGATCAGCAGATGTGTCACGATGCATTG
rJMFF002F10- AAATATCCTTTAGTTTGTTGCCAACCACCTTCAGATCAGCAGATGTGTCACGATGCATTG
rJMFF028D13- AAATATCCTTTAGTTTGTTGCCAACCACCTTCAGATCAGCAGATGTGTCACGATGCATTG
rJMFF003F16- AAATATCCTTTAGTTTGTTGCCAACCACCTTCAGATCAGCAGATGTGTCACGATGCATTG
rJMFF013N03- AAATATCCTTTAGTTTGTTGCCAACCACCTTCAGATCAGCAGATGTGTCACGATGCATTG
rJMFF024G08- AAATATCCTTTAGTTTGTTGCCAACCACCTTCAGATCAGCAGATGTGTCACGATGCATTG
rJMFF017D23- AAATATCCTTTAGTTTGTTGCCAACCACCTTCAGATCAGCAGATGTGTCACGATGCATTG
____________________________________________________________
consensus AAATATCCTTTAGTTTGTTGCCAACCACCTTCAGATCAGCAGATGTGTCACGATGCATTG
. : . : . : . : . : . :
rJMFF033K12- CAGACATGTCAGGAGTCCTTAAAATGAAAGGAATTTTCAACTTTGGTGGGACAGTATCAC
rJMFF002F10- CAGACATGTCAGGAGTCCTTAAAATGAAAGGAATTTTCAACTTTGGTGGGACAGTATCAC
rJMFF028D13- CAGACATGTCAGGAGTCCTTAAAATGAAAGGAATTTTCAACTTTGGTGGGACAGTATCAC
rJMFF003F16- CAGACATGTCAGGAGTCCTTAAAATGAAAGGAATTTTCAACTTTGGTGGGACAGTATCAC
rJMFF013N03- CAGACATGTCAGGAGTCCTTAAAATGAAAGGAATTTTCAACTTTGGTGGGACAGTATCAC
rJMFF024G08- CAGACATGTCAGGAGTCCTTAAAATGAAAGGAATTTTCAACTTTGGTGGGACAGTATCAC
rJMFF017D23- CAGACATGTCAGGAGTCCTTAAAATGAAAGGAATTTTCAACTTTGGTGGGACAGTATCAC
____________________________________________________________
consensus CAGACATGTCAGGAGTCCTTAAAATGAAAGGAATTTTCAACTTTGGTGGGACAGTATCAC
. : . : . : . : . : . :
rJMFF033K12- C-AAAAAGTTCGGCTTCTTCAGCCATTTTGCACAAG
rJMFF002F10- C-AAAAAGTTCGGCTTCTTCAGCCATTTTGCACAAGACTCTCCGGACAATCTCTCCGAGA
rJMFF028D13- C-AAAAAGTTCGGCTTCTTCAGCCATTTTGCACAAGAC
rJMFF003F16- C-AAAAAGTTCGGCTTCTTCAGCCATTTTGCACAAGACTCTCCGGACAATCTCTCCG
rJMFF013N03- CAAAAAAGTTCGGCTTCTTCAGCCATTTTGCACAAGACTCTCCGGACAATCTCTCCG
rJMFF024G08- C-AAAAAGTTCGGCTTCTTCAGCCATTTTGCACAAGACTCTCCGGACAATCTCTCCGAGA
rJMFF017D23- C-AAAAAGTTCGGCTTCTTCAGCCATTTTGCACAAGACTCTCCGGACAATCTCTCCGAGA
____________________________________________________________
consensus C-AAAAAGTTCGGCTTCTTCAGCCATTTTGCACAAGACTCTCCGGACAATCTCTCCGAGA
. : . : . : . : . : . :
rJMFF002F10- TACATGCCAG
rJMFF024G08- TACATGCCAGAAATTAGCTTCTCGTATATCTGCTCTCCCGGGTTC
rJMFF017D23- TACATGCCAGAAATTAGCTTCTCGTATATCTGCTCTCCCGGGTTCAGGCTCTCGGCATCC
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consensus TACATGCCAGAAATTAGCTTCTCGTATATCTGCTCTCCCGGGTTCAGGCTCTCGGCATCC