Contig 012270:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014J23Sequence552007588 (5)ref|XP_009765456.1|5e-20PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana sylvestris]789012270 (4)ref|XP_009612696.1|6e-118PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo
JMSF003D06Sequence332007588 (5)ref|XP_009765457.1|5e-09PREDICTED: putative ion channel POLLUX-like 2 isoform X2 [Nicotiana sylvestris]756012270 (4)ref|XP_009612696.1|8e-128PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo
JMSF012N16Sequence491007588 (5)ref|XP_009765456.1|4e-12PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana sylvestris]742012270 (4)ref|XP_009612696.1|2e-126PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo
JMSF042D06Sequence822007588 (5)ref|XP_009765456.1|2e-61PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana sylvestris]696012270 (4)ref|XP_009612696.1|1e-110PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF012N16+ TGGATGA
rJMSF003D06+ TTCCCTTGGATGA
rJMFF014J23+ TGGATGA
                      ____________________________________________________________
consensus TTCCCTTGGATGA
 
. : . : . : . : . : . :
rJMSF012N16+ CAGAAATAAAGCTAGCAGACTTACTGGT-CATGGGAAGCTAAGGAATGTGCAAATTTCTC
rJMSF003D06+ CAGAAATAAAGCTAGCAGACTTACTGGT-CATGGGAAGCTAAGGAATGTGCAAATTTCTC
rJMFF014J23+ CAGAAATAAAGCTAGCAGACTTACTGGTCCATGGGAAGCTAAGGAATGTGCAAATTTCTC
                      ____________________________________________________________
consensus CAGAAATAAAGCTAGCAGACTTACTGGT-CATGGGAAGCTAAGGAATGTGCAAATTTCTC
 
. : . : . : . : . : . :
rJMSF012N16+ ACAGGATTGGAAACCCGATGGACTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
rJMSF003D06+ ACAGGATTGGAAACCCGATGGACTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
rJMSF042D06+ TTGGAAACCCGATGGACTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
rJMFF014J23+ ACAGGATTGGAAACCCGATGGTCTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
                      ____________________________________________________________
consensus ACAGGATTGGAAACCCGATGGACTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
 
. : . : . : . : . : . :
rJMSF012N16+ AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
rJMSF003D06+ AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
rJMSF042D06+ AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
rJMFF014J23+ AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
                      ____________________________________________________________
consensus AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
 
. : . : . : . : . : . :
rJMSF012N16+ GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
rJMSF003D06+ GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
rJMSF042D06+ GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
rJMFF014J23+ GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
                      ____________________________________________________________
consensus GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
 
. : . : . : . : . : . :
rJMSF012N16+ AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
rJMSF003D06+ AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
rJMSF042D06+ AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
rJMFF014J23+ AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
                      ____________________________________________________________
consensus AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
 
. : . : . : . : . : . :
rJMSF012N16+ CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
rJMSF003D06+ CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
rJMSF042D06+ CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
rJMFF014J23+ CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
                      ____________________________________________________________
consensus CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
 
. : . : . : . : . : . :
rJMSF012N16+ AAGTAATGAGCCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
rJMSF003D06+ AAGTAATGAGCCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
rJMSF042D06+ AAGTAATGAACCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
rJMFF014J23+ AAGTAATGAGCCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
                      ____________________________________________________________
consensus AAGTAATGAGCCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
 
. : . : . : . : . : . :
rJMSF012N16+ AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
rJMSF003D06+ AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
rJMSF042D06+ AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
rJMFF014J23+ AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
                      ____________________________________________________________
consensus AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
 
. : . : . : . : . : . :
rJMSF012N16+ AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
rJMSF003D06+ AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
rJMSF042D06+ AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
rJMFF014J23+ AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
                      ____________________________________________________________
consensus AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
 
. : . : . : . : . : . :
rJMSF012N16+ TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
rJMSF003D06+ TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
rJMSF042D06+ TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
rJMFF014J23+ TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
                      ____________________________________________________________
consensus TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
 
. : . : . : . : . : . :
rJMSF012N16+ CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
rJMSF003D06+ CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
rJMSF042D06+ CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
rJMFF014J23+ CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
                      ____________________________________________________________
consensus CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
 
. : . : . : . : . : . :
rJMSF012N16+ CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
rJMSF003D06+ CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
rJMSF042D06+ CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
rJMFF014J23+ CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
                      ____________________________________________________________
consensus CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
 
. : . : . : . : . : . :
rJMSF012N16+ CCAGGAAAC
rJMSF003D06+ CCAGGAAACTGCCCTTGTT
rJMSF042D06+ CCAGGAAACTGCCCTTGTTTCTTGAATTATTCTCATCCATTT
rJMFF014J23+ CCAGGAAACTGCCCTTGTTTCTTGAATTATTCTCATCCATTTTATTGATTATTTTCCCCT
                      ____________________________________________________________
consensus CCAGGAAACTGCCCTTGTTTCTTGAATTATTCTCATCCATTTTATTGATTATTTTCCCCT