Contig 012268:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014F20Sequence579007830 (6)ref|XP_008459143.1|6e-38PREDICTED: cellulose synthase-like protein D3 [Cucumis melo]731012268 (4)ref|XP_008234563.1|1e-74PREDICTED: cellulose synthase-like protein D3 [Prunus mume]
JMFF035E04Sequence500007830 (6)ref|XP_002274896.1|7e-20PREDICTED: cellulose synthase-like protein D3 [Vitis vinifera]702012268 (4)ref|XP_008234563.1|2e-72PREDICTED: cellulose synthase-like protein D3 [Prunus mume]
JMSF019M24Sequence259007830 (6)ref|XP_011084614.1|1e-04PREDICTED: cellulose synthase-like protein D3 [Sesamum indicum]774012268 (4)gb|KJB26747.1|2e-108hypothetical protein B456_004G257300 [Gossypium raimondii]
JMSF029M24Sequence658007830 (6)ref|XP_006347576.1|8e-92PREDICTED: cellulose synthase-like protein D3-like [Solanum tuberosum]695012268 (4)ref|XP_008234563.1|9e-82PREDICTED: cellulose synthase-like protein D3 [Prunus mume]

Alignment

This contig is upended


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rJMSF019M24+                                                       CTTGATCATCACTGT
                      ____________________________________________________________
consensus                                                          CTTGATCATCACTGT
 
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rJMSF019M24+          TACTCTCTGTATGCTTGCGGTGCTTGAGGTCAAGTGGGCGGGTATTGAGTTGGAGGAGTG
rJMFF014F20+                                                          GTTGGAGGAGTG
                      ____________________________________________________________
consensus             TACTCTCTGTATGCTTGCGGTGCTTGAGGTCAAGTGGGCGGGTATTGAGTTGGAGGAGTG
 
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rJMSF019M24+          GTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACAAGTGCCCACTTGGCTGCTGTTCT
rJMSF029M24+                                          GGACAAGTGCCCACTTGGCTGCTGTTCT
rJMFF035E04+                                          GGACAAGTGCCCACTTGGCTGCTGTTCT
rJMFF014F20+          GTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACAAGTGCCCACTTGGCTGCTGTTCT
                      ____________________________________________________________
consensus             GTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACAAGTGCCCACTTGGCTGCTGTTCT
 
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rJMSF019M24+          TCAA-GGGCTCCTGAAAGTCATTGCTGGAATCGAGATTTCATTTACTTTGACATCAAAAT
rJMSF029M24+          TCAA-GGGCTCCTGAAAGTCATTGCTGGAATCGAGATTTCATTTACTTTGACATCAAAAT
rJMFF035E04+          TCAA-GGGCTCCTGAAAGTCATTGCTGGAATCGAGATTTCATTTACTTTGACATCAAAAT
rJMFF014F20+          TCAAGGGGCTCCTGAAAGTCATTGCTGGAATCGAGATTTCATTTACTTTGACATCAAAAT
                      ____________________________________________________________
consensus             TCAA-GGGCTCCTGAAAGTCATTGCTGGAATCGAGATTTCATTTACTTTGACATCAAAAT
 
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rJMSF019M24+          CAGCTGGTGATGATGAAGATGATGATTTTGCTGACCTCTACATTGTTAAATGGTCATCCC
rJMSF029M24+          CAGCTGGTGATGATGAAGATGATGATTTTGCTGACCTCTACATTGTTAAATGGTCATCCC
rJMFF035E04+          CAGCTGGTGATGATGAAGATGATGATTTTGCTGACCTCTACATTGTTAAATGGTCATCCC
rJMFF014F20+          CAGCTGGTGATGATGAAGATGATGATTTTGCTGACCTCTACATTGTTAAATGGTCATCCC
                      ____________________________________________________________
consensus             CAGCTGGTGATGATGAAGATGATGATTTTGCTGACCTCTACATTGTTAAATGGTCATCCC
 
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rJMSF019M24+          TCATGATTCCACCCATCACAATCATGATGGTCAACTTAATAGCAATAGCTGTTGGATTCA
rJMSF029M24+          TCATGATTCCACCCATCACAATCATGATGGTCAACTTAATAGCAATAGCTGTTGGATTCA
rJMFF035E04+          TCATGATTCCACCCATCACAATCATGATGGTCAACTTAATAGCAATAGCTGTTGGATTCA
rJMFF014F20+          TCATGATTCCACCCATCACAATCATGATGGTCAACTTAATAGCAATAGCTGTTGGATTCA
                      ____________________________________________________________
consensus             TCATGATTCCACCCATCACAATCATGATGGTCAACTTAATAGCAATAGCTGTTGGATTCA
 
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rJMSF019M24+          GCCGGACCATATACAGTGTCATACCACAATGGAGTCGCTTACTAGGAGGTGTTTTCTTCA
rJMSF029M24+          GCCGGACCATATACAGTGTCATACCACAATGGAGTCGCTTACTAGGAGGTGTTTTCTTCA
rJMFF035E04+          GCCGGACCATATACAGTGTCATACCACAATGGAGTCGCTTACTAGGAGGTGTTTTCTTCA
rJMFF014F20+          GCCGGACCATATACAGTGTCATACCACAATGGAGTCGCTTACTAGGAGGTGTTTTCTTCA
                      ____________________________________________________________
consensus             GCCGGACCATATACAGTGTCATACCACAATGGAGTCGCTTACTAGGAGGTGTTTTCTTCA
 
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rJMSF019M24+          GCTTTTGGGTCCTGGCACATCTTTATCCTTTCGCAAAAGGGCTTATGGGCAGACGAGGCA
rJMSF029M24+          GCTTTTGGGTCCTGGCACATCTTTATCCTTTCGCAAAAGGGCTTATGGGCAGACGAGGCA
rJMFF035E04+          GC-TTTGGGTCCTGGCACATCTTTATCCTTTCGCAAAAGGGCTTATGGGCAGACGAGGCA
rJMFF014F20+          GC-TTTGGGTCCTGGCACATCTTTATCCTTTCGCAAAAGGGCTTATGGGCAGACGAGGCA
                      ____________________________________________________________
consensus             GCTTTTGGGTCCTGGCACATCTTTATCCTTTCGCAAAAGGGCTTATGGGCAGACGAGGCA
 
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rJMSF019M24+          GGACACCAACCATTGTCTTTGTGTGGTCAGGGCTTATTTCTATTACTATATCCCTTCTTT
rJMSF029M24+          GGACACCAACCATTGTCTTTGTGTGGTCAGGGCTTATTTCTATTACTATATCCCTTCTTT
rJMFF035E04+          GGACACCAACCATTGTCTTTGTGTGGTCATGGCTTATTTCTATTACTATATCCCTTCTTT
rJMFF014F20+          GGACACCAACCATTGTCTTTGTGTGGTCAGGGCTTATTTCTATTACTATATCCCTTCTTT
                      ____________________________________________________________
consensus             GGACACCAACCATTGTCTTTGTGTGGTCAGGGCTTATTTCTATTACTATATCCCTTCTTT
 
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rJMSF019M24+          GGGTTGCAATCAATCCTCCAGAAGGTGCAAACGAAATCGGGGGCTCATTCCAATTCCCAT
rJMSF029M24+          GGGTTGCAATCAATCCTCCAGAAGGTGCAAACGAAATCGGGGGCTCATTCCAATTCCCAT
rJMFF035E04+          GGGTTGCAATCAATCCTCCAGAAGGTGCAAACGAAATCGGGGGCTCATTCCAATTCCCAT
rJMFF014F20+          GGGTTGCAATCAATCCTCCAGAAGGTGCAAACGAAATCGGGGGCTCATTCCAATTCCCAT
                      ____________________________________________________________
consensus             GGGTTGCAATCAATCCTCCAGAAGGTGCAAACGAAATCGGGGGCTCATTCCAATTCCCAT
 
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rJMSF019M24+          GATCAGTCTTCCTTCATCTCAACGAGCCAAGCACTGTGGAAAACCAAAGCGGGTACGCCT
rJMSF029M24+          GATCAGTCTTCCTTCATCTCAACGAGCCAAGCACTGTGGAAAACCAAAGCGGGTACGCCT
rJMFF035E04+          GATCAGTCTTCCTTCATCTCAACGAGCCAAGCACTGTGGAAAACCAAAGCGGGTACGCCT
rJMFF014F20+          GATCAGTCTTCCTTCATCTCAACGAGCCAAGCACTGTGGAAAACCAAAGCGGGTACGCCT
                      ____________________________________________________________
consensus             GATCAGTCTTCCTTCATCTCAACGAGCCAAGCACTGTGGAAAACCAAAGCGGGTACGCCT
 
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rJMSF019M24+          CAATTCCTTGTAAAACCATACAGAGTAGTAGGTTGCATATTTAATTAGCAAGACCAGCTT
rJMSF029M24+          CAATTCCTTGTAAAACCATACAGAGTAGTAGGTTGCATATTTAATTAGCAAGACCAGCTT
rJMFF035E04+          CAATTCCTTGTAAAACCATACAGAGTAGTAGGTTGCATATTTAATTAGCAAGACCAGCTT
rJMFF014F20+          CAATTCCTTGTAAAACCATACAGAGTAGTAGGTTGCATATTTAATTAGCAAGACCAGCTT
                      ____________________________________________________________
consensus             CAATTCCTTGTAAAACCATACAGAGTAGTAGGTTGCATATTTAATTAGCAAGACCAGCTT
 
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rJMSF019M24+          CCTACATCCTGCTTGATTACTTTTAGCGTGGTTGATGCAGAGCTTTGCAAACTTTATGTG
rJMSF029M24+          CCTACATCCTGCTTGATTACTTTTAGCGTGGTTGATGCAGAGCTTTGCAAACTTTATGTG
rJMFF035E04+          CCTACATCCTGCTTGATTACTTTTAGCGTGGTTGATGCAGAGCTTTGCAAACTTTATGTG
rJMFF014F20+          CCTACATCCTGCTTGATTACTTTTAGCGTGGTTGATGCAGAGCTTTGCAAACTTTATGTG
                      ____________________________________________________________
consensus             CCTACATCCTGCTTGATTACTTTTAGCGTGGTTGATGCAGAGCTTTGCAAACTTTATGTG
 
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rJMSF019M24+          AGGTGAAAGGGTAGACAAAATTCTCTCTTCTTG                           
rJMSF029M24+          AGGTGAAAGGGTAGACAAAATTCTCTCTTCTTG                           
rJMFF035E04+          AGGTGAAAGGGTAGACAAAATTCTCTCTTCTTGTAACATCT                   
rJMFF014F20+          AGGTGAAAGGGTAGACAAAATTCTCTCTTCTTGTAACATCTTGGACAGGAATTTATAATT
                      ____________________________________________________________
consensus             AGGTGAAAGGGTAGACAAAATTCTCTCTTCTTGTAACATCTTGGACAGGAATTTATAATT