Contig 012234:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF006F23-                              GTTTTCCATCAACTTATAAAGCAAGCTGGAAACCTAAGCTA
JMSF043A18-                                                    AAGCTGGAAACCTAAGCTA
                      ____________________________________________________________
consensus                                GTTTTCCATCAACTTATAAAGCAAGCTGGAAACCTAAGCTA
 
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JMFF006F23-           AGCTAGCTTCAATTCATTCATATCAGAATGGGCAGCCAAAGTGTCATAACATGCAAAGCT
JMSF043A18-           AGCTAGCTTCAATTCATTCATATCAGAATGGGCAGCCAAAGTGTCATAACATGCAAAGCT
                      ____________________________________________________________
consensus             AGCTAGCTTCAATTCATTCATATCAGAATGGGCAGCCAAAGTGTCATAACATGCAAAGCT
 
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JMFF006F23-           GCTGTGGCTTGGAGATCAGGAGAGGCGTTGAAGTTGGAGGAGATACAAGTGGACCCACCC
JMSF043A18-           GCTGTGGCTTGGAGATCAGGAGAGGCGTTGAAGTTGGAGGAGATACAAGTGGACCCACCC
                      ____________________________________________________________
consensus             GCTGTGGCTTGGAGATCAGGAGAGGCGTTGAAGTTGGAGGAGATACAAGTGGACCCACCC
 
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JMFF006F23-           AAAGCTCGAGAGGTTCGGATTAAGATGCTCTATGCCAGCTTGTGTGGGACAGATATCCTC
JMSF043A18-           AAAGCTCGAGAGGTTCGGATTAAGATGCTCTATGCCAGCTTGTGTGGGACAGATATCCTC
                      ____________________________________________________________
consensus             AAAGCTCGAGAGGTTCGGATTAAGATGCTCTATGCCAGCTTGTGTGGGACAGATATCCTC
 
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JMFF006F23-           TGCTGCAACGGCTTTCCACGTCCTTTGTTCCCTCGCATTCCTGGACATGAAGGAGTTGGG
JMSF043A18-           TGCTGCAACGGCTTTCCACGTCCTTTGTTCCCTCGCATTCCTGGACATGAAGGAGTTGGG
                      ____________________________________________________________
consensus             TGCTGCAACGGCTTTCCACGTCCTTTGTTCCCTCGCATTCCTGGACATGAAGGAGTTGGG
 
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JMFF006F23-           ATCATAGAAAGCGTAGGTGAAGAAGTGACAAGCCTTAAAGAAGGAGATACAGTGATGCCC
JMSF043A18-           ATCATAGAAAGCGTAGGTGAAGAAGTGACAAGCCTTAAAGAAGGAGATACAGTGATGCCC
                      ____________________________________________________________
consensus             ATCATAGAAAGCGTAGGTGAAGAAGTGACAAGCCTTAAAGAAGGAGATACAGTGATGCCC
 
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JMFF006F23-           CATTTCATAGGAGAATGCGGAGAATGCCCAAACTGCATTTCTGGGAAGTCAAATTTATGT
JMSF043A18-           CATTTCATAGGAGAATGCGGAGAATGCCCAAACTGCATTTCTGGGAAGTCAAATTTATGT
                      ____________________________________________________________
consensus             CATTTCATAGGAGAATGCGGAGAATGCCCAAACTGCATTTCTGGGAAGTCAAATTTATGT
 
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JMFF006F23-           TTCAAATACCCACTCAGCTTCACGGGGTTGCTTTTGGATGGAAGCTCGAGAATGTCCATC
JMSF043A18-           TTCAAATACCCACTCAGCTTCACGGGGTTGCTTTTGGATGGAAGCTCGAGAATGTCCATC
                      ____________________________________________________________
consensus             TTCAAATACCCACTCAGCTTCACGGGGTTGCTTTTGGATGGAAGCTCGAGAATGTCCATC
 
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JMFF006F23-           AATGGCGGCGAGCAGAGAATATACCACCACGTCAGCTGCTCCACGCTGTCGGAGTACCTC
JMSF043A18-           AATGGCGGCGAGCAGAGAATATACCACCACGTCAGCTGCTCCACGCTGTCGGAGTACCTC
                      ____________________________________________________________
consensus             AATGGCGGCGAGCAGAGAATATACCACCACGTCAGCTGCTCCACGCTGTCGGAGTACCTC
 
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JMFF006F23-           GTACTCGACGAAAACTATGTTGTCAAGGTGGACCCACGCCTCCCTCTCCACCATGCTAGC
JMSF043A18-           GTACTCGACGAAAACTATGTTGTCAAGGTGGACCCACGCCTCCCTCTCCACCATGCTAGC
rJMSF043A18+                                                     CTCTCCACCATGCTAGC
                      ____________________________________________________________
consensus             GTACTCGACGAAAACTATGTTGTCAAGGTGGACCCACGCCTCCCTCTCCACCATGCTAGC
 
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JMFF006F23-           TTCCTCTGCTGTTCCTTCACCA                                      
JMSF043A18-           TTCCTCTGCTGTTCCTTCACCACTGGCTATGGCGCGGCTCTGAAATTGGCCGACATTGAC
rJMSF043A18+          TTCCTCTGCTGTTCCTTCACCACTGGCTATGGCGCGGCTCTGAAATTGGCCGACATTGAC
                      ____________________________________________________________
consensus             TTCCTCTGCTGTTCCTTCACCACTGGCTATGGCGCGGCTCTGAAATTGGCCGACATTGAC
 
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JMSF043A18-           CATAACTCAACTGTTGCTGTGCTGGGTCTTGGCGGCGTTGGACTTGGCG           
rJMSF043A18+          CATAACTCAACTGTTGCTGTGCTGGGTCTTGGCGGCGTTGGACTTGGCGTGGTAGAGGGA
rJMFF006F23+                                       TGGCGGCGTTGGACTTGGCGTGGTAGAGGGA
                      ____________________________________________________________
consensus             CATAACTCAACTGTTGCTGTGCTGGGTCTTGGCGGCGTTGGACTTGGCGTGGTAGAGGGA
 
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rJMSF043A18+          GCAAGAGAACTAGGAGCGGCGAAAATAATTGGAATTGACATTCACGATAAGAAGGAAGAA
rJMFF006F23+          GCAAGAGAACTAGGAGCGGCGAAAATAATTGGAATTGACATTCACGATAAGAAGGAAGAA
                      ____________________________________________________________
consensus             GCAAGAGAACTAGGAGCGGCGAAAATAATTGGAATTGACATTCACGATAAGAAGGAAGAA
 
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rJMSF043A18+          AAGGGAAGGGTTTTTGGCGTGACAGAGTTCATAAATGCAAAGAAGAATTGTGAGGATAAA
rJMFF006F23+          AAGGGAAGGGTTTTTGGCGTGACAGAGTTCATAAATGCAAAGAAGAATTGTGAGGATAAA
                      ____________________________________________________________
consensus             AAGGGAAGGGTTTTTGGCGTGACAGAGTTCATAAATGCAAAGAAGAATTGTGAGGATAAA
 
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rJMSF043A18+          AGAATTTCAGAAATGGTGAAAGAAGTTACGGGAGGACTGGGCGTTGATTACTTTTTCGAG
rJMFF006F23+          AGAATTTCAGAAATGGTGAAAGAAGTTACGGGAGGACTGGGCGTTGATTACTTTTTCGAG
                      ____________________________________________________________
consensus             AGAATTTCAGAAATGGTGAAAGAAGTTACGGGAGGACTGGGCGTTGATTACTTTTTCGAG
 
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rJMSF043A18+          TGCACCGACGTCCCCGACTTGATGATCAACCAAGCTATTGAAGCAACTAGAAAGGGATTT
rJMFF006F23+          TGCACCGACGTCCCCGACTTGATGATCAACCAAGCTATTGAAGCAACTAGAAAGGGATTT
                      ____________________________________________________________
consensus             TGCACCGACGTCCCCGACTTGATGATCAACCAAGCTATTGAAGCAACTAGAAAGGGATTT
 
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rJMSF043A18+          GGGACAGTGATTCTGCTGGGAGCAGGACTACAAATTGATTGGCAAATGAATTACGTTCCC
rJMFF006F23+          GGGACAGTGATTCTGCTGGGAGCAGGACTACAAATTGATTGGCAAATGAATTACGTTCCC
                      ____________________________________________________________
consensus             GGGACAGTGATTCTGCTGGGAGCAGGACTACAAATTGATTGGCAAATGAATTACGTTCCC
 
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rJMSF043A18+          CTAATGATGGGTCGGACTTTGAAGGGCTCTATCTACGGAGGCGTCAGGATTCGATCTGAC
rJMFF006F23+          CTAATGATGGGTCGGACTTTGAAGGGCTCTATCTACGGAGGCGTCAGGATTCGATCTGAC
                      ____________________________________________________________
consensus             CTAATGATGGGTCGGACTTTGAAGGGCTCTATCTACGGAGGCGTCAGGATTCGATCTGAC
 
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rJMSF043A18+          CTTCCTTCCATCATAAATAAATGCATAAATAAGGAAATTAAATTAGATGAATTGAGTAGT
rJMFF006F23+          CTTCCTTCCATCATAAATAAATGCATAAATAAGGAAATTAAATTAGATGAATTGAGTAGT
                      ____________________________________________________________
consensus             CTTCCTTCCATCATAAATAAATGCATAAATAAGGAAATTAAATTAGATGAATTGAGTAGT
 
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rJMSF043A18+          CAAGAATTTTCACTGCATGAAGCGAACGAAGCATTAGAGTACTTAAAAAATCCAGATTGC
rJMFF006F23+          CAAGAATTTTCACTGCATGAAGCGAACGAAGCATTAGAGTACTTAAAAAATCCAGATTGC
                      ____________________________________________________________
consensus             CAAGAATTTTCACTGCATGAAGCGAACGAAGCATTAGAGTACTTAAAAAATCCAGATTGC
 
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rJMSF043A18+          GTCAAGGTTTTAATCAAGTTCTAGGCTAGATTTTAAATTCTCGGCTCATGTGCTTTCAAC
rJMFF006F23+          GTCAAGGTTTTAATCAAGTTCTAGGCTAGATTTTAAATTCTCGGCTCATGTGCTTTCAAC
                      ____________________________________________________________
consensus             GTCAAGGTTTTAATCAAGTTCTAGGCTAGATTTTAAATTCTCGGCTCATGTGCTTTCAAC
 
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rJMSF043A18+          CT                                                          
rJMFF006F23+          CTCTCCACTCCGCTCATTATGTTATGGGTTTCTGTTATAATAATATTATTATTATAATTT
                      ____________________________________________________________
consensus             CTCTCCACTCCGCTCATTATGTTATGGGTTTCTGTTATAATAATATTATTATTATAATTT
 
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rJMFF006F23+          AATTAAACCAAGTATGTGGGAGTTGTGGCAATGCATGCAGATTGAGGATGCAGTAAGTGG
                      ____________________________________________________________
consensus             AATTAAACCAAGTATGTGGGAGTTGTGGCAATGCATGCAGATTGAGGATGCAGTAAGTGG
 
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rJMFF006F23+          GTCATGACTTTACAATACATGGAGCATGCATCTCCTAAATTTATGCTTTACTAGTTTTGT
                      ____________________________________________________________
consensus             GTCATGACTTTACAATACATGGAGCATGCATCTCCTAAATTTATGCTTTACTAGTTTTGT
 
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rJMFF006F23+          ATTCACTATAAATAGGCTTGTTATTAACCATTTTAAATCATCAATTTGAATCAATAAAAT
                      ____________________________________________________________
consensus             ATTCACTATAAATAGGCTTGTTATTAACCATTTTAAATCATCAATTTGAATCAATAAAAT