clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF005D09 | Sequence | 476 | 011536 (3) | ref|XP_009805042.1| | 5e-57 | PREDICTED: protein notum homolog [Nicotiana sylvestris] | 632 | 012228 (3) | gb|EYU35369.1| | 3e-87 | hypothetical protein MIMGU_mgv1a0197532mg, partial [Erythranthe guttata] |
JMFF006H13 | Sequence | 542 | 011536 (3) | ref|XP_009805042.1| | 1e-67 | PREDICTED: protein notum homolog [Nicotiana sylvestris] | 609 | 012228 (3) | gb|EYU35369.1| | 2e-87 | hypothetical protein MIMGU_mgv1a0197532mg, partial [Erythranthe guttata] |
JMFF020N13 | Sequence | 414 | 011536 (3) | ref|XP_009805042.1| | 2e-24 | PREDICTED: protein notum homolog [Nicotiana sylvestris] | 627 | 012228 (3) | gb|EYU35369.1| | 3e-87 | hypothetical protein MIMGU_mgv1a0197532mg, partial [Erythranthe guttata] |
This contig is upended
. : . : . : . : . : . :
rJMFF006H13+ CCTCGTGCTTCTTTCCTCAGAATTTGATCGCA
rJMFF020N13+ CTCGTGCTTCTTTCCTCAGAATTTGATCGCA
rJMFF005D09+ CTCGTGCTTCTTTCCTCAGAATTTGATCGCA
____________________________________________________________
consensus CCTCGTGCTTCTTTCCTCAGAATTTGATCGCA
. : . : . : . : . : . :
rJMFF006H13+ AACATCAACACTCCGCTCTTCTTACTCAATGCTGCCTATGATTCGTGGCAGGTCCAAGCC
rJMFF020N13+ AACATCAACACTCCGCTCTTCTTACTCAATGCTGCCTATGATTCGTGGCAGGTCCAAGCC
rJMFF005D09+ AACATCAACACTCCGCTCTTCTTACTCAATGCTGCCTATGATTCGTGGCAGGTCCAAGCC
____________________________________________________________
consensus AACATCAACACTCCGCTCTTCTTACTCAATGCTGCCTATGATTCGTGGCAGGTCCAAGCC
. : . : . : . : . : . :
rJMFF006H13+ AGCTTGGCTCCTCCTTCAGCTGACCCGAATGGGGCTTGGCATGACTGCAAAGCGGACCAT
rJMFF020N13+ AGCTTGGCTCCTCCTTCAGCTGACCCGAATGGGGCTTGGCATGACTGCAAAGCGGACCAT
rJMFF005D09+ AGCTTGGCTCCTCCTTCAGCTGACCCGAATGGGGCTTGGCATGACTGCAAAGCGGACCAT
____________________________________________________________
consensus AGCTTGGCTCCTCCTTCAGCTGACCCGAATGGGGCTTGGCATGACTGCAAAGCGGACCAT
. : . : . : . : . : . :
rJMFF006H13+ CAGAAATGCTCGACGTCACAGATTAAATTTCTGCAAGGATTTAGGAATGATATGCTGGAC
rJMFF020N13+ CAGAAATGCTCGACGTCACAGATTAAATTTCTGCAAGGATTTAGGAATGATATGCTGGAC
rJMFF005D09+ CAGAAATGCTCGACGTCACAGATTAAATTTCTGCAAGGATTTAGGAATGATATGCTGGAC
____________________________________________________________
consensus CAGAAATGCTCGACGTCACAGATTAAATTTCTGCAAGGATTTAGGAATGATATGCTGGAC
. : . : . : . : . : . :
rJMFF006H13+ GCTGTAAAGGGGTTCGCAGCTTCTAAACAGACGGGCTTGTTCATAAATTCATGCTTCGCC
rJMFF020N13+ GCTGTAAAGGGGTTCGCAGCTTCTAAACAGACGGGCTTGTTCATAAATTCATGCTTCGCC
rJMFF005D09+ GCTGTAAAGGGGTTCGCAGCTTCTAAACAGACGGGCTTGTTCATAAATTCATGCTTCGCC
____________________________________________________________
consensus GCTGTAAAGGGGTTCGCAGCTTCTAAACAGACGGGCTTGTTCATAAATTCATGCTTCGCC
. : . : . : . : . : . :
rJMFF006H13+ CACTGCCAGTCCGAGAGGCAGGATACATGGTTCGCTGACGATTCTCCTGTTATCAATAAC
rJMFF020N13+ CACTGCCAGTCCGAGAGGCAGGATACATGGTTCGCTGACGATTCTCCTGTTATCAATAAC
rJMFF005D09+ CACTGCCAGTCCGAGAGGCAGGATACATGGTTCGCTGACGATTCTCCTGTTATCAATAAC
____________________________________________________________
consensus CACTGCCAGTCCGAGAGGCAGGATACATGGTTCGCTGACGATTCTCCTGTTATCAATAAC
. : . : . : . : . : . :
rJMFF006H13+ AAGGCAATTGCACTTGCGGTTGGAGATTGGTATTTTGATCGGGCTAGCGTGAAATATATT
rJMFF020N13+ AAGGCAATTGCACTTGCGGTTGGAGATTGGTATTTTGATCGGGCTAGCGTGAAATATATT
rJMFF005D09+ AAGGCAATTGCACTTGCGGTTGGAGATTGGTATTTTGATCGGGCTAGCGTGAAATATATT
____________________________________________________________
consensus AAGGCAATTGCACTTGCGGTTGGAGATTGGTATTTTGATCGGGCTAGCGTGAAATATATT
. : . : . : . : . : . :
rJMFF006H13+ GACTGCGCATACCCTTGTGACAAAACATGCCACAACTTGGTGTTCAGATGAGCCTGAGCC
rJMFF020N13+ GACTGCGCATACCCTTGTGACAAAACATGCCACAACTTGGTGTTCAGATGAGCCTGAGCC
rJMFF005D09+ GACTGCGCATACCCTTGTGACAAAACATGCCACAACTTGGTGTTCAGATGAGCCTGAGCC
____________________________________________________________
consensus GACTGCGCATACCCTTGTGACAAAACATGCCACAACTTGGTGTTCAGATGAGCCTGAGCC
. : . : . : . : . : . :
rJMFF006H13+ TGAGCCTGCACTTTTTATTTCTTTAATTTATTGAAAGAGTATAATAATTTTAGCTGAGTT
rJMFF020N13+ TGAGCCTGCACTTTTTATTTCTTTAATTTATTGAAAGAGTATAATAATTTTAGCTGAGTT
rJMFF005D09+ TGAGCCTGCACTTTTTATTTCTTTAATTTATTGAAAGAGTATAATAATTTTAGCTGAGTT
____________________________________________________________
consensus TGAGCCTGCACTTTTTATTTCTTTAATTTATTGAAAGAGTATAATAATTTTAGCTGAGTT
. : . : . : . : . : . :
rJMFF006H13+ TATATAAGATAATCTGTGTCAGTAATTTATGTTTCCCATTAATTTGCAAATGTAAAAGAA
rJMFF020N13+ TATATAAGATAATCTGTGTCAGTAATTTATGTTTCCCATTAATTTGCAAATGTAAAAGAA
rJMFF005D09+ TATATAAGATAATCTGTGTCAGTAATTTATGTTTCCCATTAATTTGCAAATGTAAAAGAA
____________________________________________________________
consensus TATATAAGATAATCTGTGTCAGTAATTTATGTTTCCCATTAATTTGCAAATGTAAAAGAA
. : . : . : . : . : . :
rJMFF006H13+ TTAAGGGATACAATAATGTGATGATTGTCTTGTCTTG
rJMFF020N13+ TTAAGGGATACAATAATGTGATGATTGTCTTGTCTTGTTGTAAGCAATTGTATTAA
rJMFF005D09+ TTAAGGGATACAATAATGTGATGATTGTCTTGTCTTGTTGTAAGCAATTGTATTAATATT
____________________________________________________________
consensus TTAAGGGATACAATAATGTGATGATTGTCTTGTCTTGTTGTAAGCAATTGTATTAATATT