Contig 012219:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003N10-                                                TATATATGGCAATATAGGAATG
                      ____________________________________________________________
consensus                                                   TATATATGGCAATATAGGAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003N10-          AATGAATGGAATACCCTTTGGACATAAGATTCCGGCATGAGAGACCGGAGCACGGCGAGG
                      ____________________________________________________________
consensus             AATGAATGGAATACCCTTTGGACATAAGATTCCGGCATGAGAGACCGGAGCACGGCGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003N10-          TGTTCATTCATCTGTTTCCGGCGGTTTCTCTCGACGGCAATGTGAGTCATCCTCTGAGTC
                      ____________________________________________________________
consensus             TGTTCATTCATCTGTTTCCGGCGGTTTCTCTCGACGGCAATGTGAGTCATCCTCTGAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003N10-          TCAGCCTCCTCTTTGTTCTTACAAACCTTGGGCCGCCTCCGCCGATTCTTCCGGCCACCA
                      ____________________________________________________________
consensus             TCAGCCTCCTCTTTGTTCTTACAAACCTTGGGCCGCCTCCGCCGATTCTTCCGGCCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003N10-          CCGCCTTCCCGCACGGCCCCCTCGGAACCCTCCGCCGCCCCCACCAAGTTACTGCTCCGA
                      ____________________________________________________________
consensus             CCGCCTTCCCGCACGGCCCCCTCGGAACCCTCCGCCGCCCCCACCAAGTTACTGCTCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003N10+                       CCACCACTACCCACGCCGCCGGTGGTCAAATCTTGAGTCTCCGGGCAG
rJMFF003N10-          CCGCTATTTAAACCACCACTACCCACGCCGCCGGTGGTCAAATCTTGAGTCTCCGGGCAG
                      ____________________________________________________________
consensus             CCGCTATTTAAACCACCACTACCCACGCCGCCGGTGGTCAAATCTTGAGTCTCCGGGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003N10+           ACATTTTCCGAGAAGAGGGCGTTGTTTCCGCCGGCGGCGGCGCCGGAGAGCGTGGCGTCG
rJMFF003N10-          ACATTTTCCGAGAAGAGGGCGTTGTTTCCGCCGGCGGCGGCGCCGGAGAGCGTGGCGTCG
                      ____________________________________________________________
consensus             ACATTTTCCGAGAAGAGGGCGTTGTTTCCGCCGGCGGCGGCGCCGGAGAGCGTGGCGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003N10+           TAGAATATGAAGTTGAAGGGGTCATTATTATTGCAGGGAGTGGTGGAAAGTGCTTCCAAA
rJMFF003N10-          TAGAATATGAAGTTGAAGGGGTCATTATTATTGCAGGGAGTGGTGGAAAGTGCTTCCAAA
                      ____________________________________________________________
consensus             TAGAATATGAAGTTGAAGGGGTCATTATTATTGCAGGGAGTGGTGGAAAGTGCTTCCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003N10+           GCCATATCTGATCTCTCTGTGTACTTTAATTTCTGCAGAATCTATATATATATATACATA
rJMFF003N10-          GCCATATCTGATCTCTCTGTGTACTTTAATTTCTGCAGAATCTATATATATATATACATA
                      ____________________________________________________________
consensus             GCCATATCTGATCTCTCTGTGTACTTTAATTTCTGCAGAATCTATATATATATATACATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003N10+           CAGTGCATGTGGGAAGAAAGAAGGTTGAATTGGTGGTCTTCAATGGCTACTTCTCATCAT
rJMFF003N10-          CAGTGCATGTGGGAAGAAAGAAGGTTGAATTGGGGGTCTTCAATGGCTACTTCTCATCAT
                      ____________________________________________________________
consensus             CAGTGCATGTGGGAAGAAAGAAGGTTGAATTGGTGGTCTTCAATGGCTACTTCTCATCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003N10+           CTATCATCGTCCATTCTTCTGCAAGAATCGAAAAGGCTTCAATTATTTTATAGTTCATTC
rJMFF003N10-          CTATCATCGTCCATTCTTCTGCAAGAATCGAAAAGGCTTCAATTATTTTATAGNTCATTC
                      ____________________________________________________________
consensus             CTATCATCGTCCATTCTTCTGCAAGAATCGAAAAGGCTTCAATTATTTTATAGTTCATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003N10+           ATCAGCTATTGTGTCTGGAACATGAAAGAGAGAGAAGAGAGAGATTTGTGTACTTTGCTC
rJMFF003N10-          ATCAGCTATTGTGTCTGGAACATGAAAGAGAGAGAAGAGAGAGATTTGTGTACTTTGCTC
                      ____________________________________________________________
consensus             ATCAGCTATTGTGTCTGGAACATGAAAGAGAGAGAAGAGAGAGATTTGTGTACTTTGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF003N10+           TCTCTCTCTTT                                                 
rJMFF003N10-          TCTCTCTCTTTTTGCACGCTTTTTGAAGCTGAANAGCACAACACNATATGCTATATAGTC
                      ____________________________________________________________
consensus             TCTCTCTCTTTTTGCACGCTTTTTGAAGCTGAANAGCACAACACNATATGCTATATAGTC