Contig 012218:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF003M20-                                         GTCTTCAGCCCAACCAAGGGTTTTGACGCT
JMSF040N07-                                        TGTCTTCAGCCCAACCAAGGGTTTTGACGCT
                      ____________________________________________________________
consensus                                          TGTCTTCAGCCCAACCAAGGGTTTTGACGCT
 
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JMFF003M20-           AGAATCTCGAATCAGAAATGGCAGCAATTAGAAACACTTCGAGATTGATTTCAGGAACTG
JMSF040N07-           AGAATCTCGAATCAGAAATGGCAGCAATTAGAAACACTTCGAGATTGATTTCAGGAACTG
                      ____________________________________________________________
consensus             AGAATCTCGAATCAGAAATGGCAGCAATTAGAAACACTTCGAGATTGATTTCAGGAACTG
 
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JMFF003M20-           TGCGCTATTGTCTCACTGAGTCTTCATCTTCGTCAGTGGCGAGGAACGTTATCCGGTCTG
JMSF040N07-           TGCGCTATTGTCTTACTGAGTCTTCATCTTCGTCATTGGCGAGGAACGTTATCCGGTCTG
rJMSF040N07+                                               GGCGAGGAACGTTATCCGGTCTG
                      ____________________________________________________________
consensus             TGCGCTATTGTCTTACTGAGTCTTCATCTTCGTCATTGGCGAGGAACGTTATCCGGTCTG
 
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JMFF003M20-           GCTCACGTGCTATTAGCTCTTTTCCTGCTCGGTGCGCTGCGGCGTCAGATGCGAGCCACC
JMSF040N07-           GCTCACGTGCTATTAGCTCTTTTCCTGCTCGGTGCGCTGCGGCGTCAGATGCGAGCCACC
rJMSF040N07+          GCTCACGTGCTATTAGCTCTTTTCCTGCTCGGTGCGCTGCGGCGTCAGATGCGAGCCACC
                      ____________________________________________________________
consensus             GCTCACGTGCTATTAGCTCTTTTCCTGCTCGGTGCGCTGCGGCGTCAGATGCGAGCCACC
 
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JMFF003M20-           TCGAGAGGAAGATACCGCGACGGCGGCTTGGGCATGTTTACAAGTTCCTTCTCCAAGAGG
JMSF040N07-           TCGAGAAGAAGATACCGCGACGGCGGCTTGGGCATGTTTACAAGTTCCTTCTCCAAGAGG
rJMSF040N07+          TCGAGAAGAAGATACCGCGACGGCGGCTTGGGCATGTTTACAAGTTCCTTCTCCAAGAGG
                      ____________________________________________________________
consensus             TCGAGAAGAAGATACCGCGACGGCGGCTTGGGCATGTTTACAAGTTCCTTCTCCAAGAGG
 
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JMFF003M20-           AAGGGGAATCCTTCTCGAATAAAGAAAATATTCCTAAGATCGCTCTAAAGCATGTTTCTG
JMSF040N07-           AAGGGGAATCCTTCTCGAATAAAGAAAATATTCCTAAGATCGCTCTAAAGCATGTTTCTG
rJMSF040N07+          AAGGGGAATCCTTCTCGAATAAAGAAAATATTCCTAAGATCGCTCTAAAGCATGTTTCTG
rJMFF003M20+                          GAATAAAGAAAATATTCCTAAGATCGCTCTAAAGCATGTTTCTG
                      ____________________________________________________________
consensus             AAGGGGAATCCTTCTCGAATAAAGAAAATATTCCTAAGATCGCTCTAAAGCATGTTTCTG
 
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JMFF003M20-           TGAGCTTTACTGGACAAGGTGAATCCACTAGCAAGGTTCAACCTACTACAGAAGCTAAAA
JMSF040N07-           TGAGCTTTACTGGACAAGGTGAATCCACTAGCAAGGTTCAACCTACTACAGAAGCTAAAA
rJMSF040N07+          TGAGCTTTACTGGACAAGGTGAATCCACTAGCAAGGTTCAACCTACTACAGAAGCTAAAA
rJMFF003M20+          TGAGCTTTACTGGACAAGGTGAATCCACTAGCAAGGTTCAACCTACTACAGAAGCTAAAA
                      ____________________________________________________________
consensus             TGAGCTTTACTGGACAAGGTGAATCCACTAGCAAGGTTCAACCTACTACAGAAGCTAAAA
 
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JMFF003M20-           CCAAGCCTCGTAAAAAGGGTGGGAATCAGAATCAGAATCAAAATGCAAGCGCAGCAAACA
JMSF040N07-           CCAAGCCTCGTAAAAAGGGTGGGAATCAGAATCAGAATCAAAATGCAAGCGCAGCAAACA
rJMSF040N07+          CCAAGCCTCGTAAAAAGGGTGGGAATCAGAATCAGAATCAAAATGCAAGCGCAGCAAACA
rJMFF003M20+          CCAAGCCTCGTAAAAAGGGTGGGAATCAGAATCAGAATCAAAATGCAAGCGCAGCAAACA
                      ____________________________________________________________
consensus             CCAAGCCTCGTAAAAAGGGTGGGAATCAGAATCAGAATCAAAATGCAAGCGCAGCAAACA
 
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JMFF003M20-           AGGGTCGCATAAGGAGTATTAACACAGCTGGCACCAAGGTTATTATGAGGTTTGATGTCC
JMSF040N07-           AGGGTCGCATAAGGAGTATTAACACAGCTGGCACCAAGGTTATTATGAGGTTTGATGTCC
rJMSF040N07+          AGGGTCGCATAAGGAGTATTAACACAGCTGGCACCAAGGTTATTATGAGGTTTGATGTCC
rJMFF003M20+          AGGGTCGCATAAGGAGTATTAACACAGCTGGCACCAAGGTTATTATGAGGTTTGATGTCC
                      ____________________________________________________________
consensus             AGGGTCGCATAAGGAGTATTAACACAGCTGGCACCAAGGTTATTATGAGGTTTGATGTCC
 
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JMFF003M20-           AAAAT                                                       
JMSF040N07-           AAAATGCAGATTGGTTGAGTGAAAGAGTCAGGGAGAGGATCATGCTAATGGAAAAAGATA
rJMSF040N07+          AAAATGCAGATTGGTTGAGTGAAAGAGTCAGGGAGAGGATCATGCTAATGGAAAAAGATA
rJMFF003M20+          AAAATGCAGATTGGTTGAGTGAAAGAGTCAGGGAGAGGATCATGCTAATGGAAAAAGATA
                      ____________________________________________________________
consensus             AAAATGCAGATTGGTTGAGTGAAAGAGTCAGGGAGAGGATCATGCTAATGGAAAAAGATA
 
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JMSF040N07-           GGATCAATAGAGATGGGAAGCTTGAGCTTACCTCATCAAAGACTAGAAAACAGGAGAATA
rJMSF040N07+          GGATCAATAGAGATGGGAAGCTTGAGCTTACCTCATCAAAGACTAGAAAACAGGAGAATA
rJMFF003M20+          GGATCAATAGAGATGGGAAGCTTGAGCTTACCTCATCAAAGACTAGAAAACAGGAGAATA
                      ____________________________________________________________
consensus             GGATCAATAGAGATGGGAAGCTTGAGCTTACCTCATCAAAGACTAGAAAACAGGAGAATA
 
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JMSF040N07-           ACTACGAAGAGGTTGTTAAAAAGATGAACAAGCTACTA                      
rJMSF040N07+          ACTACGAAGAGGTTGTTAAAAAGATGAACAAGCTACTAGAAAAATTTCAGGCTATTATTA
rJMFF003M20+          ACTACGAAGAGGTTGTTAAAAAGATGAACAAGCTACTAGAAAAATTTCAGGCTATTATTA
                      ____________________________________________________________
consensus             ACTACGAAGAGGTTGTTAAAAAGATGAACAAGCTACTAGAAAAATTTCAGGCTATTATTA
 
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rJMSF040N07+          ATGCTGCTTCATATGCACCACTACCTACTCCAAAGAAGGTGGTGGAAAAGATTGCCAACT
rJMFF003M20+          ATGCTGCTTCATATGCACCACTACCTACTCCAAAGAAGGTGGTGGAAAAGATTGCCAACT
                      ____________________________________________________________
consensus             ATGCTGCTTCATATGCACCACTACCTACTCCAAAGAAGGTGGTGGAAAAGATTGCCAACT
 
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rJMSF040N07+          TCCGGGCTGAGAGAGCGGACTGCTGAAGTGCACCAGAGAAATATGTTTCTGTGTTTTGAT
rJMFF003M20+          TCCGGGCTGAGAGAGCGGACTGCTGAAGTGCACCAGAGAAATATGTTTCTGTGTTTTGAT
                      ____________________________________________________________
consensus             TCCGGGCTGAGAGAGCGGACTGCTGAAGTGCACCAGAGAAATATGTTTCTGTGTTTTGAT
 
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rJMSF040N07+          GTGGTAACATATGGATGACAAGCTAATATTATTGTAGGGTATACGTTTTTACGGCCTCAA
rJMFF003M20+          GTGGTAACATATGGATGACAAGCTAATATTATTGTAGGGTATACGTTTTTACGGCCTCAA
                      ____________________________________________________________
consensus             GTGGTAACATATGGATGACAAGCTAATATTATTGTAGGGTATACGTTTTTACGGCCTCAA
 
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rJMSF040N07+          GTTACTACATTGTGGAAATTGGCGCGGCATTTGGTTTTCGAACTTGTGAATTTCAGGGTT
rJMFF003M20+          GTTACTACATTGTGGAAATTGGCGCGGCATTTGGTTTTCGAACTTGTGAATTTCAGGGTT
                      ____________________________________________________________
consensus             GTTACTACATTGTGGAAATTGGCGCGGCATTTGGTTTTCGAACTTGTGAATTTCAGGGTT
 
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rJMSF040N07+          TTGATAAGCCCCAATTTTCAACCGATATACCTAGTTGATTTTATTGGGTTGGAC      
rJMFF003M20+          TTGATAAGCCCCAATTTTCAACCGATATACCTAGTTGATTTTATTGGGTTGGACAAGAAT
                      ____________________________________________________________
consensus             TTGATAAGCCCCAATTTTCAACCGATATACCTAGTTGATTTTATTGGGTTGGACAAGAAT
 
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rJMFF003M20+          ATTGTCTGTTCACTTGTGCAAACATATGGTTTTGCTTTGGATAATTGTTTTGCAGAAAAT
                      ____________________________________________________________
consensus             ATTGTCTGTTCACTTGTGCAAACATATGGTTTTGCTTTGGATAATTGTTTTGCAGAAAAT