| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002N19 | Sequence | 523 | 013232 (3) | ref|XP_004251875.1| | 8e-37 | PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Solanum lycopersic | 761 | 012215 (3) | ref|XP_009595820.1| | 2e-89 | PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Nicotiana tomentos |
| JMFF034H04 | Sequence | 550 | 013232 (3) | ref|XP_004251875.1| | 2e-42 | PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Solanum lycopersic | 797 | 012215 (3) | emb|CDP05967.1| | 3e-98 | unnamed protein product [Coffea canephora] |
| JMSF006C11 | Sequence | 284 | 000608 (4) | ref|XP_004167407.1| | 3e-15 | PREDICTED: fimbrin-like protein 2-like, partial [Cucumis sativus] | 321 | 012215 (3) | |||
This contig is upended
. : . : . : . : . : . :
rJMFF034H04+ GTTGCTGCAGGCTGTCAT
____________________________________________________________
consensus GTTGCTGCAGGCTGTCAT
. : . : . : . : . : . :
rJMFF034H04+ GTTTCTACCACGTGTGGAGGTGAGAGTGTAGATCGCATTTTGGCTGCTGGTGCTGAGCAG
rJMFF002N19+ GTGAGAGTGTAGATCGCATTTTGGCTGCTGGTGCTGAGCAG
____________________________________________________________
consensus GTTTCTACCACGTGTGGAGGTGAGAGTGTAGATCGCATTTTGGCTGCTGGTGCTGAGCAG
. : . : . : . : . : . :
rJMFF034H04+ GCAGTTGATTATACCACTGAGGATATTGAAGTAGCTATAAAGGGGCACTTTGATGCAGTT
rJMFF002N19+ GCAGTTGATTATACCACTGAGGATATTGAAGTAGCTATAAAGGGGCACTTTGATGCAGTT
____________________________________________________________
consensus GCAGTTGATTATACCACTGAGGATATTGAAGTAGCTATAAAGGGGCACTTTGATGCAGTT
. : . : . : . : . : . :
rJMFF034H04+ TTGGATACAATTGGTGTTCCAGAGACGGAAAGAGTAGGCATTAACCTTTTGAAGAGAGGT
rJMFF002N19+ TTGGATACAATTGGTGTTCCAGAGACGGAAAGAGTAGGCATTAACCTTTTGAAGAGAGGT
____________________________________________________________
consensus TTGGATACAATTGGTGTTCCAGAGACGGAAAGAGTAGGCATTAACCTTTTGAAGAGAGGT
. : . : . : . : . : . :
rJMFF034H04+ GGACACTATATGACATTGCAGGGAGAGGCTGCATCATTGGCTGATAGGTATGGGCTAGCT
rJMFF002N19+ GGACACTATATGACATTGCAGGGAGAGGCTGCATCATTGGCTGATAGGTATGGGCTAGCT
____________________________________________________________
consensus GGACACTATATGACATTGCAGGGAGAGGCTGCATCATTGGCTGATAGGTATGGGCTAGCT
. : . : . : . : . : . :
rJMFF034H04+ ATTGGCCTTCCTATGTCAACAGCTATCTTGCTAAAGAAACAGATCCAATATCGATACTCT
rJMFF002N19+ ATTGGCCTTCCTATGTCAACAGCTATCTTGCTAAAGAAACAGATCCAATATCGATACTCT
____________________________________________________________
consensus ATTGGCCTTCCTATGTCAACAGCTATCTTGCTAAAGAAACAGATCCAATATCGATACTCT
. : . : . : . : . : . :
rJMFF034H04+ CATGGAATAGAGTATTGGTGGACTTACATGAGGGCTGATGCCGAGGGTTTAGATGAGATC
rJMFF002N19+ CATGGAATAGAGTATTGGTGGACTTACATGAGGGCTGATGCCGAGGGTTTAGATGAGATC
____________________________________________________________
consensus CATGGAATAGAGTATTGGTGGACTTACATGAGGGCTGATGCCGAGGGTTTAGATGAGATC
. : . : . : . : . : . :
rJMSF006C11+ CG
rJMFF034H04+ CGCAGGCTATCAGAAGCTGGAAAGCTCAAAGTACCAGTCGAAAAAACTTTCCCTTTTACG
rJMFF002N19+ CGCAGGCTATCAGAAGCTGGAAAGCTCAAAGTACCAGTCGAAAAAACTTTCCCTTTTACG
____________________________________________________________
consensus CGCAGGCTATCAGAAGCTGGAAAGCTCAAAGTACCAGTCGAAAAAACTTTCCCTTTTACG
. : . : . : . : . : . :
rJMSF006C11+ CAAGTGAAAGATGCCCATCATGCCAAGGAAAAAGGGANAATTCCTGGCAAAGTAGTCCTG
rJMFF034H04+ CAAGTGAAAGATGCCCATCATGCCAAGGAAAAAGGGAAAATTCCTGGCAAAGTAGTACTG
rJMFF002N19+ CAAGTGAAAGATGCCCATCATGCCAAGGAAAAAGGGAAAATTCCTGGCAAAGTAGTACTG
____________________________________________________________
consensus CAAGTGAAAGATGCCCATCATGCCAAGGAAAAAGGGAAAATTCCTGGCAAAGTAGTACTG
. : . : . : . : . : . :
rJMSF006C11+ GAACNAGACTAGATCAACTNGATGCGATGAGGTATGGAGCCCCAGTTTGGTTTTCNAAGT
rJMFF034H04+ GAACTAGACTAGATCAACTCGATGCGATGAGGTATGGAGCCCCAGTTTGGTTTTCAAAGT
rJMFF002N19+ GAACTAGACTAGATCAACTCGATGCGATGAGGTATGGAGCCCCAGTTTGGTTTTCAAAGT
____________________________________________________________
consensus GAACTAGACTAGATCAACTCGATGCGATGAGGTATGGAGCCCCAGTTTGGTTTTCAAAGT
. : . : . : . : . : . :
rJMSF006C11+ GTTAAATGTCATGCCCCATTTGATCCTTGACCCNATAATNATGTCAAGTTTGCATACAAA
rJMFF034H04+ GTTAAATGTCATGCCCCATTTGATCCTTGACCCAATAATAATGTCAAGTTTGCATACAAA
rJMFF002N19+ GTTAAATGTCATGCCCCATTTGATCCTTGACCCAATAATAATGTCAAGTTTGCATACAAA
____________________________________________________________
consensus GTTAAATGTCATGCCCCATTTGATCCTTGACCCAATAATAATGTCAAGTTTGCATACAAA
. : . : . : . : . : . :
rJMSF006C11+ TCTAGTGGCTGTGGCTGGNCTGCTGGTGGAGTCCCATCTGNAAAATGTAAATTCTTGAAA
rJMFF034H04+ TCTAGTGGCTGTGGCTGGACTGCTGGTGGAGTCCTATCTGTAAAATGTAAATTCTTGAAA
rJMFF002N19+ TCTAGTGGCTGTGGCTGGACTGCTGGTGGAGTCCTATCTGTAAAATGTAAATTCTTGAAA
____________________________________________________________
consensus TCTAGTGGCTGTGGCTGGACTGCTGGTGGAGTCCTATCTGTAAAATGTAAATTCTTGAAA
. : . : . : . : . : . :
rJMSF006C11+ TGTTTCTCAATTTTGTAGGTTTTTNNCATTTTCCGTTGTTCACCGAAATAAATCAATATN
rJMFF034H04+ TGTTTCTCAATTTTGTAGGTTTTTTTCATTTTCCGTTGTTCACAGAAATAAATAAATATA
rJMFF002N19+ TGTTTCTCAATTTTGTAGGTTTTTTTCATTTTCCGTTGTTCACAGAAATAAATAAATATA
____________________________________________________________
consensus TGTTTCTCAATTTTGTAGGTTTTTTTCATTTTCCGTTGTTCACAGAAATAAATAAATATA
. : . : . : . : . : . :
rJMSF006C11+ GCCAGTGGATTTCAGTCAT
rJMFF034H04+ GCCAGTGGATTTCAGTCATTACAGCTTTCAGTGCTGTAGTTGATGATGAACTAATACAA
rJMFF002N19+ GCCAGTGGATTTCAGTCATTACAGCTTTCAGTGCTGTAGTTGATGATGAACTAATACAAG
____________________________________________________________
consensus GCCAGTGGATTTCAGTCATTACAGCTTTCAGTGCTGTAGTTGATGATGAACTAATACAAG