Contig 012202:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006I06Sequence332012202 (5)emb|CAN77028.1|7e-32hypothetical protein VITISV_015339 [Vitis vinifera]549011689 (6)ref|XP_007041452.1|2e-83Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF010J06Sequence332012202 (5)emb|CAN77028.1|3e-16hypothetical protein VITISV_015339 [Vitis vinifera]769011689 (6)ref|XP_007041452.1|4e-135Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF033B18Sequence697012202 (5)ref|XP_006361853.1|6e-99PREDICTED: serine--tRNA ligase-like [Solanum tuberosum]755011689 (6)ref|XP_007041452.1|1e-115Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF036E22Sequence699012202 (5)ref|XP_009784692.1|2e-99PREDICTED: serine--tRNA ligase [Nicotiana sylvestris]687011689 (6)ref|XP_007041452.1|5e-99Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF052G03Sequence642012202 (5)ref|XP_010255943.1|6e-67PREDICTED: serine--tRNA ligase-like [Nelumbo nucifera]936011689 (6)ref|XP_007041452.1|6e-174Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF036E22+ TTCTCAAAAAATCAAGGGCAAACATGATTAGT
JMSF033B18+ CTCAAAAAATCAAGGGCAAACATGATTAGT
                      ____________________________________________________________
consensus TTCTCAAAAAATCAAGGGCAAACATGATTAGT
 
. : . : . : . : . : . :
JMSF036E22+ GCTTGGTTCAGATCAACGCCAGCATCTTTCAGATAGTAGCCTCTACCTCCAGCAATTTTT
JMSF033B18+ GCTTGGTTCAGATCAACGCCAGCATCTTTCAGATAGTAGCCTCTACCTCCAGCAATTTTT
                      ____________________________________________________________
consensus GCTTGGTTCAGATCAACGCCAGCATCTTTCAGATAGTAGCCTCTACCTCCAGCAATTTTT
 
. : . : . : . : . : . :
JMSF036E22+ GCACCCTTATCCAAATCTGCAATCCCAAGAAGCTTGACAAGATCAACATGGTTTTTAAGC
JMSF033B18+ GCACCCTTATCCAAATCTGCAATCCCAAGAAGCTTGACAAGATCAACATGGTTTTTAAGC
                      ____________________________________________________________
consensus GCACCCTTATCCAAATCTGCAATCCCAAGAAGCTTGACAAGATCAACATGGTTTTTAAGC
 
. : . : . : . : . : . :
JMSF036E22+ CCTGATTCAGTTCTCTTATCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
JMSF033B18+ CCTGATTCAGTTCTCTTATCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
JMSF052G03+ TCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
                      ____________________________________________________________
consensus CCTGATTCAGTTCTCTTATCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
 
. : . : . : . : . : . :
JMSF036E22+ CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
JMSF033B18+ CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
JMSF052G03+ CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
                      ____________________________________________________________
consensus CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
 
. : . : . : . : . : . :
JMSF036E22+ GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
JMSF033B18+ GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
JMSF052G03+ GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
                      ____________________________________________________________
consensus GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
 
. : . : . : . : . : . :
JMSF036E22+ TTCTTAATTAACTCACTTGCATCTTGTTTGGCTATCTTCAGCTTGGCCACTTCTTTGTTG
JMSF006I06+ CTTCAGCTTGGCCACTTCTTTGTTG
JMSF033B18+ TTCTTAATTAACTCACTTGCATCTTGTTTGGCTATCTTCAGCTTGGCCACTTCTTTGTTG
JMSF052G03+ TTCTTAATTAACTCACTTGCATCTTCTTTGGCTATCTTCAGCTTGGCCACTGCTTTGTTG
                      ____________________________________________________________
consensus TTCTTAATTAACTCACTTGCATCTTGTTTGGCTATCTTCAGCTTGGCCACTTCTTTGTTG
 
. : . : . : . : . : . :
JMSF036E22+ ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
JMSF006I06+ ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
JMSF033B18+ ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
JMSF010J06+ ACTTTG
JMSF052G03+ ATCTTGTTAAATTCTTTACGCAAATTATCGAACTCAAATTGACGCTGACGCCACACTTTG
                      ____________________________________________________________
consensus ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
 
. : . : . : . : . : . :
JMSF036E22+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF006I06+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF033B18+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF010J06+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF052G03+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
                      ____________________________________________________________
consensus TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
 
. : . : . : . : . : . :
JMSF036E22+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF006I06+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF033B18+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF010J06+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF052G03+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
                      ____________________________________________________________
consensus CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
 
. : . : . : . : . : . :
JMSF036E22+ TTATGGTTTGATCT
JMSF006I06+ TTATGGTTTGATCT
JMSF033B18+ TTATGGTTTGATCT
JMSF010J06+ TAATGATTTGATCTGGCAGCTGGCGAGGCAGAAGACGGTGGCGACGACTGGCGTCTGGCG
JMSF052G03+ TAATGATTTGATCTGGCAGCTGGCGAGGCAGAAGACGGTGGCGACGACTGGCGTCTGGCG
                      ____________________________________________________________
consensus TTATGGTTTGATCTGGCAGCTGGCGAGGCAGAAGACGGTGGCGACGACTGGCGTCTGGCG
 
. : . : . : . : . : . :
JMSF010J06+ AGGCAGAGGCGATGGGGACGGGCGAGTAAGAGGCGCCGTCTGGTCTCTGGTGGACTGGTG
JMSF052G03+ AGGCAGAGGCGATGGGGACGGGCGAGTAAGAGGCGCCGTCTGGTCTCTGGTGGACTGGTG
                      ____________________________________________________________
consensus AGGCAGAGGCGATGGGGACGGGCGAGTAAGAGGCGCCGTCTGGTCTCTGGTGGACTGGTG
 
. : . : . : . : . : . :
JMSF010J06+ GTGGCGAGGCAGGCGCAATGGCTACTCGGCGAGAGCAGAGAAGAAGGAGTCTCGTCGTCT
JMSF052G03+ GTGGCGAGGCAGGCGCAATGGCTACTCGGCGAGAGCAGAGAAGAAGGAGTCTCGTCGTCT
                      ____________________________________________________________
consensus GTGGCGAGGCAGGCGCAATGGCTACTCGGCGAGAGCAGAGAAGAAGGAGTCTCGTCGTCT
 
. : . : . : . : . : . :
JMSF010J06+ CGCGTGCGGCGTCTCAAAAC
JMSF052G03+ CGCGTGCGGCGTCTCAAAACCACATAATGAAAGTGTAAAAATAATAATAATAATAAAATC
                      ____________________________________________________________
consensus CGCGTGCGGCGTCTCAAAACCACATAATGAAAGTGTAAAAATAATAATAATAATAAAATC