Contig 012200:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023H08Sequence282012200 (4)680012200 (4)ref|XP_010251701.1|4e-97PREDICTED: somatic embryogenesis receptor kinase 1 [Nelumbo nucifera]
JMSF051O18Sequence691012200 (4)ref|XP_009777835.1|1e-88PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Nic776012200 (4)ref|XP_009777835.1|7e-119PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Nic

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF023H08- CATGGTACT
                      ____________________________________________________________
consensus CATGGTACT
 
. : . : . : . : . : . :
rJMFF023H08- GTTGGTATCAGTACAATATAACAATATTACACAATCTTTGTCAACCTTGATAGCAATCCT
rJMSF051O18- ACCTTGATAGCAATCCT
                      ____________________________________________________________
consensus GTTGGTATCAGTACAATATAACAATATTACACAATCTTTGTCAACCTTGATAGCAATCCT
 
. : . : . : . : . : . :
rJMFF023H08- ACATCAACGGTAACTGATTAAAGTTACAGCTTTCAATCATCTTAGGGCAGTACAGAGGTA
rJMSF051O18- ACATCAACGGTAACTGATTAAAGTTACAGCTTTCAATCATCTTAGGGCAGTACAGAGGTA
                      ____________________________________________________________
consensus ACATCAACGGTAACTGATTAAAGTTACAGCTTTCAATCATCTTAGGGCAGTACAGAGGTA
 
. : . : . : . : . : . :
rJMFF023H08- CCTATTTACTTAAGGAAACAATATGTAAACCTCTAAACACAGTGGCAGTTCGACGAGTCA
rJMSF051O18- CCTATTTACTTAAGGAAACAATATGTAAACCTCTAAACACAGTGGCAGTTCGACGAGTCA
                      ____________________________________________________________
consensus CCTATTTACTTAAGGAAACAATATGTAAACCTCTAAACACAGTGGCAGTTCGACGAGTCA
 
. : . : . : . : . : . :
rJMFF023H08- ATTGAACGACGTCTTTATGAGCAGTTTGTGTCGTAGCTTGCAAGCCCCATCAACTCCGGG
rJMSF051O18- ATTGAACGACGTCTTTATGAGCAGTTTGTGTCGTAGCTTGCAAGCCCCATCAACTCCGAG
                      ____________________________________________________________
consensus ATTGAACGACGTCTTTATGAGCAGTTTGTGTCGTAGCTTGCAAGCCCCATCAACTCCGGG
 
. : . : . : . : . : . :
rJMFF023H08- CCTTCCAGCCGAGGATTATTCTCGAAGTTGTTTAGTGGAATATGCTCAAAGGGACCACTA
rJMSF051O18- CCTTCCAGCCGAGGATTATTCTCGAAGTTGTTTAGTGGAATATGCTCAAAGGGACCACTA
                      ____________________________________________________________
consensus CCTTCCAGCCGAGGATTATTCTCGAAGTTGTTTAGTGGAATATGCTCAAAGGGACCACTA
 
. : . : . : . : . : . :
rJMFF023H08- GTTGGAATTGTTCCACAGAGATTGTTATTTGATACATCCACAACTTTAAGGGTAGAAATA
rJMSF051O18- GTTGGAATTGTTCCACAGAGATTGTTATTTGATACATCCACAACTTTAAGGGTAGAAATA
JMSF051O18+ TGATACATCCACAACTTTAAGGGTAGAAATA
                      ____________________________________________________________
consensus GTTGGAATTGTTCCACAGAGATTGTTATTTGATACATCCACAACTTTAAGGGTAGAAATA
 
. : . : . : . : . : . :
rJMFF023H08- CTAGCAAGTTCCCTTGGAATTCTCCCGGTTAACTGATTATCGTTAAAACGCAGGAATACA
rJMSF051O18- CTAGCAAGTTCCCTTGGAATTCTCCCGGTTAACTGATTATCGTTAAAACGCAGGAATACA
JMSF051O18+ CTAGCAAGTTCCCTTGGAATTCTCCCGGTTAACTGATTATCGTTAAAACGCAGGAATACA
                      ____________________________________________________________
consensus CTAGCAAGTTCCCTTGGAATTCTCCCGGTTAACTGATTATCGTTAAAACGCAGGAATACA
 
. : . : . : . : . : . :
rJMFF023H08- AGACTTTTCAACTTTCCCAATGAAGGAGGAATAGTCCCCGAGATATTATTGTTGTACAAA
rJMSF051O18- AGACTTTTCAACTTTCCCAATGAAGGAGGAATAGTCCCCGAGATATTATTGTTGTACAAA
JMSF051O18+ AGACTTTTCAACTTTCCCAATGAAGGAGGAATAGTCCCCGAGATATTATTGTTGTACAAA
                      ____________________________________________________________
consensus AGACTTTTCAACTTTCCCAATGAAGGAGGAATAGTCCCCGAGATATTATTGTTGTACAAA
 
. : . : . : . : . : . :
rJMFF023H08- TCCAAACTTATAAGGTTCTTCAAGTTACCAAGCTCGTCTGGAATTGTGCCCTGAATATTA
rJMSF051O18- TCCAAACTTATAAGGTTCTTCAAGTTACCAAGCTCGTCTGGAATTGTGCCCTGAATATTA
JMSF051O18+ TCCAAACTTATAAGGTTCTTCAAGTTACCAAGCTCGTCTGGAATTGTGCCCTGAATATTA
                      ____________________________________________________________
consensus TCCAAACTTATAAGGTTCTTCAAGTTACCAAGCTCGTCTGGAATTGTGCCCTGAATATTA
 
. : . : . : . : . : . :
rJMFF023H08- TTTTTGTAAAGTCCCAGATACTGCAAATGCTCAAGCTTCCCAAGATCAGGCACCAGATGG
rJMSF051O18- TTTTTGTAAAGTTCCAGATACTGCAAATGCTCAAGCTTCCCAAGATCAGGCACCAGATGG
JMSF051O18+ TTTTTGTAAAGTTCCAGATACTGCAAATGCTCAAGCTTCCCAAGATCAGGCACCAGATGG
                      ____________________________________________________________
consensus TTTTTGTAAAGTTCCAGATACTGCAAATGCTCAAGCTTCCCAAGATCAGGCACCAGATGG
 
. : . : . : . : . : . :
rJMFF023H08- CCAGATAAGTTCGAGTTTCCAAGGTCCACGCGGGTAACATGGTTGTCTT
rJMSF051O18- CCAGATAAGTTCGAGTTTCCAAGGTCCACGCGGGTAACATGGTTGTCTTGGTTGCAGGTG
JMSF051O18+ CCAGATAAGTTCGAGTTTCCAAGGTCCACGCGGGTAACATGGTTGTCTTGGTTGCAGGTG
                      ____________________________________________________________
consensus CCAGATAAGTTCGAGTTTCCAAGGTCCACGCGGGTAACATGGTTGTCTTGGTTGCAGGTG
 
. : . : . : . : . : . :
rJMSF051O18- ATGTGGAACCAGGTGCAAGGGTTCACCAGATTGGGATCCCAGCTCTGGAGCACGTTATCA
JMSF051O18+ ATGTGGAACCAGGTGCAAGGGTTCACCAGATTGGGATCCCAGCTCTGGAGCACGTTATCA
                      ____________________________________________________________
consensus ATGTGGAACCAGGTGCAAGGGTTCACCAGATTGGGATCCCAGCTCTGGAGCACGTTATCA
 
. : . : . : . : . : . :
rJMSF051O18- AGGTCCGACAAGCTCCGCCGCAGCGCGTAGAGCGCGTCCC
JMFF023H08+ CCGCAGCGCGTAGAGCGCGTCCCCTTCCGAATTTCCGGCAACT
JMSF051O18+ AGGTCCGACAAGCTCCGCCGCAGCGCGTAGAGCGCGTCCCCTTCCGAATTTCCGGCAACT
                      ____________________________________________________________
consensus AGGTCCGACAAGCTCCGCCGCAGCGCGTAGAGCGCGTCCCCTTCCGAATTTCCGGCAACT
 
. : . : . : . : . : . :
JMFF023H08+ CTCCCCGCCAGGGCCACTACCACCACTGCAACCACCAACCCTGACAAATAACCAGTAGCT
JMSF051O18+ CTCCCCGCCAGGGCCACTACCACCACTGCAACCACCAACCCTGACAAATAACCAGTAGCT
                      ____________________________________________________________
consensus CTCCCCGCCAGGGCCACTACCACCACTGCAACCACCAACCCTGACAAATAACCAGTAGCT
 
. : . : . : . : . : . :
JMFF023H08+ GCTGCCATAGCTTCTCCAAACAGTTGCCTGGCCCGACCCGACTGCTGACTCTAGGTTTGC
JMSF051O18+ GCTGCCATAGCTTCTCCAAACAGTTGCCTGGCCCGACCCGACTGCTGACTCTAGGTTTGC
                      ____________________________________________________________
consensus GCTGCCATAGCTTCTCCAAACAGTTGCCTGGCCCGACCCGACTGCTGACTCTAGGTTTGC
 
. : . : . : . : . : . :
JMFF023H08+ TCTTTGATCTTGAGCTTTGAGTTTGATCTATTCAGCTATGAAGCTGTAGATATACGACAA
JMSF051O18+ TCTTTGATCTTGAGCTTTGAGTTTGATCTATTCAGCTATGAAGCTGTAGATATACGACAA
                      ____________________________________________________________
consensus TCTTTGATCTTGAGCTTTGAGTTTGATCTATTCAGCTATGAAGCTGTAGATATACGACAA
 
. : . : . : . : . : . :
JMFF023H08+ AAAAAACAGAAGAGATAGAGAGAGAAAAAGGAAAATGAAGAATCGATTTTGGAAA
JMSF051O18+ AAAAAACAGAAGAGATAGAGAGAGAAAAAGGAAAATGAAGAATCGATTTTGGAAATGACC
                      ____________________________________________________________
consensus AAAAAACAGAAGAGATAGAGAGAGAAAAAGGAAAATGAAGAATCGATTTTGGAAATGACC