Contig 012189:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006A13Sequence431012189 (3)ref|XP_011008528.1|1e-78PREDICTED: probable serine/threonine-protein kinase At1g01540 isoform X3 [Popul661002513 (2)emb|CDP01314.1|5e-67unnamed protein product [Coffea canephora]
JMFS127A03Sequence608012189 (3)emb|CDP01314.1|2e-65unnamed protein product [Coffea canephora]
JMSF049J20Sequence680012189 (3)ref|XP_009771085.1|1e-59PREDICTED: probable serine/threonine-protein kinase At1g01540 [Nicotiana sylves768002513 (2)emb|CDP01314.1|3e-94unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF006A13+                                               TCCCATGTAAGAGGGCTGCAGGGT
                      ____________________________________________________________
consensus                                                 TCCCATGTAAGAGGGCTGCAGGGT
 
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JMFF006A13+           CCTACATCTCCATGGAGCCACTGTTCCAAGTTTCCATTGTTGACATACTCATATACAAGC
                      ____________________________________________________________
consensus             CCTACATCTCCATGGAGCCACTGTTCCAAGTTTCCATTGTTGACATACTCATATACAAGC
 
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JMFF006A13+           ATCCTATGTGCTCCCTCGGCGCAGTAACCAAGCAACCTCACCAGATTCTTGTGCCGGAAA
JMFS127A03+                                                                      A
                      ____________________________________________________________
consensus             ATCCTATGTGCTCCCTCGGCGCAGTAACCAAGCAACCTCACCAGATTCTTGTGCCGGAAA
 
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JMFF006A13+           CGCCCAATTGCTTCAACTTCAACCTTAAACTCCCTCTCAGCTTGTCCCCTGTTATTGAGC
JMFS127A03+           CGCCCAATTGCTTCAACTTCAACCTTAAACTCCCTCTCAGCTTGTCCCCTGTTATTGAGC
                      ____________________________________________________________
consensus             CGCCCAATTGCTTCAACTTCAACCTTAAACTCCCTCTCAGCTTGTCCCCTGTTATTGAGC
 
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JMFF006A13+           AGATTCTTTACAGCAACTTTAGTGTTGTCCTCGAGAACACCACAGTAAACAATGCCATAA
JMFS127A03+           AGATTCTTTACAGCAACTTTAGTGTTGTCCTCGAGAACACCACAGTAAACAATGCCATAA
JMSF049J20+                                                   CACAGTAAACAATGCCATAA
                      ____________________________________________________________
consensus             AGATTCTTTACAGCAACTTTAGTGTTGTCCTCGAGAACACCACAGTAAACAATGCCATAA
 
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JMFF006A13+           CCACCTTCACCAATCACATTCTCATCAGCAAACCCATTCGTCGCTATTTCGAGCTCCCTC
JMFS127A03+           CCACCTTCACCAATCACATTCTCATCAGCAAACCCATTCGTCGCTATTTCGAGCTCCCTC
JMSF049J20+           CCACCTTCACCAATCACATTCTCATCAGCAAACCCATTCGTCGCTATTTCGAGCTCCCTC
                      ____________________________________________________________
consensus             CCACCTTCACCAATCACATTCTCATCAGCAAACCCATTCGTCGCTATTTCGAGCTCCCTC
 
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JMFF006A13+           AGAGTATACCAATGGCCCCACCCCAAGTGCGAAACCTCCGGCACAGTAATGGCGGGCGCC
JMFS127A03+           AGAGTATACCAATGGCCCCACCCCAAGTGCGAAACCTCCGGCACAGTAATGGCGGGCGCC
JMSF049J20+           AGAGTATACCAATGGCCCCACCCCAAGTGCGAAACCTCCGGCACAGTAATGGCGGGCGCC
                      ____________________________________________________________
consensus             AGAGTATACCAATGGCCCCACCCCAAGTGCGAAACCTCCGGCACAGTAATGGCGGGCGCC
 
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JMFF006A13+           TGATCACCCGACCGCGACTCTCCACTCCCGCTGCCGGGACCAAC                
JMFS127A03+           TGATCACCCGACCGCGACTCTCCACTCCCGCTGCCGGGACCAACACGCTGCTCCGGATAC
JMSF049J20+           TGATCACCCGACCGCGACTCTCCACTCCCGCTGCCGGGACCAACACGCTGCTCCGGATAC
                      ____________________________________________________________
consensus             TGATCACCCGACCGCGACTCTCCACTCCCGCTGCCGGGACCAACACGCTGCTCCGGATAC
 
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JMFS127A03+           GAAATTCTGTGGCCCTTCCCTATTTCGATGTTAATTCTCTGCTGCCCACCGGAGCTGTGG
JMSF049J20+           GAAATTCTGTGGCCCTTCCCTATTTCGATGTTAATTCTCTGCTGCCCACCGGAGCTGTGG
                      ____________________________________________________________
consensus             GAAATTCTGTGGCCCTTCCCTATTTCGATGTTAATTCTCTGCTGCCCACCGGAGCTGTGG
 
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JMFS127A03+           CTCTCGTCCTCGAAAAGGTCAGGCTCCGGGACCGGGTCGGGTACAGGAGCTGGCAAAAGC
JMSF049J20+           CTCTCGTCCTCGAAAAGGTCAGGCTCCGGGACCGGGTCGGGTACAGGAGCTGGCAAAAGC
                      ____________________________________________________________
consensus             CTCTCGTCCTCGAAAAGGTCAGGCTCCGGGACCGGGTCGGGTACAGGAGCTGGCAAAAGC
 
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JMFS127A03+           ATGGGCTTTTCTGGATGTGTTCTGGAGGGGTCAATCCGGATTTCCTGAATCTCCTTGGAG
JMSF049J20+           ATGGGCTTTTCTGGATGTGTTCTGGAGGGGTCAATCCGGATTTCCTGAATCTCCTTGGAG
                      ____________________________________________________________
consensus             ATGGGCTTTTCTGGATGTGTTCTGGAGGGGTCAATCCGGATTTCCTGAATCTCCTTGGAG
 
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JMFS127A03+           GCGTTGGGGATTTTGGAGTTCTTGTGAGCAAGAAGAGTGGTGGTAGACTTCTTACTGCTG
JMSF049J20+           GCGTTGGGGATTTTGGAGTTCTTGTGAGCAAGAAGAGTGGTGGTAGACTTCTTACTGCTG
                      ____________________________________________________________
consensus             GCGTTGGGGATTTTGGAGTTCTTGTGAGCAAGAAGAGTGGTGGTAGACTTCTTACTGCTG
 
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JMFS127A03+           TTGCGGCGGGAGGTGAACCAGAGGGAGACGAGGAAGAGAACGAGCACAATTGCAGCTCCG
JMSF049J20+           TTGCGGCGGGAGGTGAACCAGAGGGAGACGAGGAAGAGAACGAGCACAATTGCAGCTCCG
                      ____________________________________________________________
consensus             TTGCGGCGGGAGGTGAACCAGAGGGAGACGAGGAAGAGAACGAGCACAATTGCAGCTCCG
 
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JMFS127A03+           ACACA                                                       
JMSF049J20+           ACACAGATACCCAGAACGACCCATAACCGCAACCCGAATATCGAGGTGCGCTTCGATAGC
                      ____________________________________________________________
consensus             ACACAGATACCCAGAACGACCCATAACCGCAACCCGAATATCGAGGTGCGCTTCGATAGC
 
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JMSF049J20+           TGATCGTTCAGAAACGCCGACATTCTCTTCTAGTCTTCTTCTTCAGCTTCAGCTGTGCTT
                      ____________________________________________________________
consensus             TGATCGTTCAGAAACGCCGACATTCTCTTCTAGTCTTCTTCTTCAGCTTCAGCTGTGCTT
 
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JMSF049J20+           TAACGAAACTCGACACACCACATTTACAAAGAACCGTTGAAAGATTGAAGGACGAAGACC
                      ____________________________________________________________
consensus             TAACGAAACTCGACACACCACATTTACAAAGAACCGTTGAAAGATTGAAGGACGAAGACC