Contig 012175:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002I13Sequence737012175 (4)ref|XP_004230833.1|241PREDICTED: uncharacterized protein LOC101255248 [Solanum lycopersicum]
JMSF034G21Sequence616012175 (4)ref|XP_004230833.1|225PREDICTED: uncharacterized protein LOC101255248 [Solanum lycopersicum]
JMSF048B05Sequence618012175 (4)ref|XP_004230833.1|225PREDICTED: uncharacterized protein LOC101255248 [Solanum lycopersicum]711012175 (4)ref|XP_004230833.1|240PREDICTED: uncharacterized protein LOC101255248 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF048B05-                                           ATTGTCTGCCGAAACCCAGTATTTATA
rJMFF002I13-                     AAGCTACAGATTGAAGACTACAATTGTCTGCCGAAACCCAGTATTTATA
                      ____________________________________________________________
consensus                        AAGCTACAGATTGAAGACTACAATTGTCTGCCGAAACCCAGTATTTATA
 
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rJMSF048B05-          TTAATCAACAGACTTTATAAGAAGATTACAGATCAGAGTAACTATACATTTATTCCTTCA
rJMFF002I13-          TTAATCAACAGACTTTATAAGAAGATTACAGATCAGAGTAACTATACATTTATTCCTTCA
                      ____________________________________________________________
consensus             TTAATCAACAGACTTTATAAGAAGATTACAGATCAGAGTAACTATACATTTATTCCTTCA
 
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rJMSF048B05-          ACCTCTACTCACTAGTAGTATAAACATGGAGCTGAATATGAATATCAATAGGTTTGGTGA
rJMFF002I13-          ACCTCTACTCACTAGTAGTATAAACATGGAGCTGAATATGAATATCAATAGGTTTGGTGA
                      ____________________________________________________________
consensus             ACCTCTACTCACTAGTAGTATAAACATGGAGCTGAATATGAATATCAATAGGTTTGGTGA
 
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rJMSF048B05-          TCAGGTGCTTGGGAGTACCATGCCGGGGATTTCCCTTTGATCCTCAGTAATCTGGTGAAA
rJMFF002I13-          TCAGGTGCTTGGGAGTACCATGCCGGGGATTTCCCTTTGATCCTCAGTAATCTGGTGAAA
JMSF034G21+                                                     CTCAGTAATCTGGTGAAA
JMSF048B05+                                                     CTCAGTAATCTGGTGAAA
                      ____________________________________________________________
consensus             TCAGGTGCTTGGGAGTACCATGCCGGGGATTTCCCTTTGATCCTCAGTAATCTGGTGAAA
 
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rJMSF048B05-          GGGGAATCTGGCATCAAAGCTCTCTCTTCTTCTTCAACCTCTTCTCTTGACTTGGGCAAT
rJMFF002I13-          GGGGAATCTGGCATCAAAGCTCTCTCTTCTTCTTCAACCTCTTCTCTTGACTTGGGCAAT
JMSF034G21+           GGGGAATCTGGCATCAAAGCTCTCTCTTCTTCTTCAACCTCTTCTCTTGACTTGGGCAAT
JMSF048B05+           GGGGAATCTGGCATCAAAGCTCTCTCTTCTTCTTCAACCTCTTCTCTTGACTTGGGCAAT
                      ____________________________________________________________
consensus             GGGGAATCTGGCATCAAAGCTCTCTCTTCTTCTTCAACCTCTTCTCTTGACTTGGGCAAT
 
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rJMSF048B05-          CCGTCAGGTACAGGGCACACCCTTTCCTCATCAACTTTATCACTGTTCTTCGCCTTCGCG
rJMFF002I13-          CCGTCAGGTACAGGGCACACCCTTTCCTCATCAACTTTATCACTGTTCTTCGCCTTCGCG
JMSF034G21+           CCGTCAGGTACAGGGCACACCCTTTCCTCATCAACTTTATCACTGTTCTTCGCCTTCGCG
JMSF048B05+           CCGTCAGGTACAGGGCACACCCTTTCCTCATCAACTTTATCACTGTTCTTCGCCTTCGCG
                      ____________________________________________________________
consensus             CCGTCAGGTACAGGGCACACCCTTTCCTCATCAACTTTATCACTGTTCTTCGCCTTCGCG
 
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rJMSF048B05-          GGTTCCTGCAAATTTTTCGCCGGTTTCTGCATTGACGCGATCCCATGCACGCACCCAATC
rJMFF002I13-          GGTTCCTGCAAATTTTTCGCCGGTTTCTGCATTGACGCGATCCCATGCACGCACCCAATC
JMSF034G21+           GGTTCCTGCAAATTTTTCGCCGGTTTCTGCATTGACGCGATCCCATGCACGCACCCAATC
JMSF048B05+           GGTTCCTGCAAATTTTTCGCCGGTTTCTGCATTGACGCGATCCCATGCACGCACCCAATC
                      ____________________________________________________________
consensus             GGTTCCTGCAAATTTTTCGCCGGTTTCTGCATTGACGCGATCCCATGCACGCACCCAATC
 
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rJMSF048B05-          AGAGATTTCACTCCACCTGCTTGCAGGATTAGCCTCTCCACCTCCTCCTTTGGATGTTCT
rJMFF002I13-          AGAGATTTCACTCCACCTGCTTGCAGGATTAGCCTCTCCACCTCCTCCTTTGGATGTTCT
JMSF034G21+           AGAGATTTCACTCCACCTGCTTGCAGGATTAGCCTCTCCACCTCCTCCTTTGGATGTTCT
JMSF048B05+           AGAGATTTCACTCCACCTGCTTGCAGGATTAGCCTCTCCACCTCCTCCTTTGGATGTTCT
                      ____________________________________________________________
consensus             AGAGATTTCACTCCACCTGCTTGCAGGATTAGCCTCTCCACCTCCTCCTTTGGATGTTCT
 
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rJMSF048B05-          TTTTCAAGATCCTTGAGTTCAAAATACGCCCTCCAGCAGCTATAGGAATCATCCCCTTCC
rJMFF002I13-          TTTTCAAGATCCTTGAGTTCAAAATACGCCCTCCAGCAGCTATAGGAATCATCCCCTTCC
JMSF034G21+           TTTTCAAGATCCTTGAGTTCAAAATACGCCCTCCAGCAGCTATAGGAATCATCCCCTTCC
JMSF048B05+           TTTTCAAGATCCTTGAGTTCAAAATACGCCCTCCAGCAGCTATAGGAATCATCCCCTTCC
                      ____________________________________________________________
consensus             TTTTCAAGATCCTTGAGTTCAAAATACGCCCTCCAGCAGCTATAGGAATCATCCCCTTCC
 
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rJMSF048B05-          AGAACAGAGCAATAATCTGCGAGTTCGCGTTCGCATTTCTCGATGAGAGGAGGGTCTTTA
rJMFF002I13-          AGAACAGAGCAATAATCTGCGAGTTCGCGTTCGCATTTCTCGATGAGAGGAGGGTCTTTA
JMSF034G21+           AGAACAGAGCAATAATCTGCGAGTTCGCGTTCGCATTTCTCGATGAGAGGAGGGTCTTTA
JMSF048B05+           AGAACAGAGCAATAATCTGCGAGTTCGCGTTCGCATTTCTCGATGAGAGGAGGGTCTTTA
                      ____________________________________________________________
consensus             AGAACAGAGCAATAATCTGCGAGTTCGCGTTCGCATTTCTCGATGAGAGGAGGGTCTTTA
 
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rJMSF048B05-          ACGACTCTCTCGAGCTTGCTCCGGCTAAAAGGCTCGAGCTTTGGTATCGAACCATTGGTT
rJMFF002I13-          ACGACTCTCTCGAGCTTGCTCCGGCTAAAAGGCTCGAGCTTTGGTATCGAACCATTGGTT
JMSF034G21+           ACGACTCTCTCGAGCTTGCTCCGGCTAAAAGGCTCGAGCTTTGGTATCGAACCATTGGTT
JMSF048B05+           ACGACTCTCTCGAGCTTGCTCCGGCTAAAAGGCTCGAGCTTTGGTATCGAACCATTGGTT
                      ____________________________________________________________
consensus             ACGACTCTCTCGAGCTTGCTCCGGCTAAAAGGCTCGAGCTTTGGTATCGAACCATTGGTT
 
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rJMSF048B05-          CTTGAAGAACACCGGATGGTGAGCGGATTTACAGCGCTTCCTGAACCATGGCTTTTATTT
rJMFF002I13-          CTTGAAGAACACCGGATGGTGAGCGGATTTACAGCGCTTCCTGAACCATGGCTTTTATTT
JMSF034G21+           CTTGAAGAACACCGGATGGTGAGCGGATTTACAGCGCTTCCTGAACCATGGCTTTTATTT
JMSF048B05+           CTTGAAGAACACCGGATGGTGAGCGGATTTACAGCGCTTCCTGAACCATGGCTTTTATTT
                      ____________________________________________________________
consensus             CTTGAAGAACACCGGATGGTGAGCGGATTTACAGCGCTTCCTGAACCATGGCTTTTATTT
 
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rJMSF048B05-          GCAGCTTCAAAAAGAAGAGCTGAA                                    
rJMFF002I13-          GCAGCTTCAAAAAGAAGAGCTGAA                                    
JMSF034G21+           GCAGCTTCAAAAAGAAGAGCTGAAGAAGACGAAAATGGCAGATGGGGTTTCAAACTAACA
JMSF048B05+           GCAGCTTCAAAAAGAAGAGCTGAAGAAGACGAAAATGGCAGATGGGGTTTCAAACTAACA
                      ____________________________________________________________
consensus             GCAGCTTCAAAAAGAAGAGCTGAAGAAGACGAAAATGGCAGATGGGGTTTCAAACTAACA
 
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JMSF034G21+           GATCGCAACATTTTTCCTTTGTGTAATGTTCAGAGACGACTCATCAATTCAAAAATC   
JMSF048B05+           GATCGCAACATTTTTCCTTTGTGTAATGTTCAGAGACGACTCATCAATTCAAAAATCATC
                      ____________________________________________________________
consensus             GATCGCAACATTTTTCCTTTGTGTAATGTTCAGAGACGACTCATCAATTCAAAAATCATC