Contig 012170:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF047J03Sequence672012170 (2)ref|XP_009620625.1|1e-94PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48 [Nicotiana tomentosi753012170 (2)ref|XP_009620625.1|2e-25PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48 [Nicotiana tomentosi

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF047J03- ATTCTCATTAGTCTAAAATACATATTTCACAGGTCA
                      ____________________________________________________________
consensus ATTCTCATTAGTCTAAAATACATATTTCACAGGTCA
 
. : . : . : . : . : . :
rJMSF047J03- ATAAGCAAAAGTAATGTACAAAGTACTACAGGAGCAAAGATGATCTGTACCTCATATTTT
                      ____________________________________________________________
consensus ATAAGCAAAAGTAATGTACAAAGTACTACAGGAGCAAAGATGATCTGTACCTCATATTTT
 
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rJMSF047J03- CTAAACATTGCCATCTTGCTTGGTTGGTGCACAATCCAAATAAAGCTGCATTACTTCTAA
                      ____________________________________________________________
consensus CTAAACATTGCCATCTTGCTTGGTTGGTGCACAATCCAAATAAAGCTGCATTACTTCTAA
 
. : . : . : . : . : . :
rJMSF047J03- CCTCAGTTCAATAAAACTAGCATAATGCAGATTCTTCAACAACCAGGACTCCCTTAATTC
                      ____________________________________________________________
consensus CCTCAGTTCAATAAAACTAGCATAATGCAGATTCTTCAACAACCAGGACTCCCTTAATTC
 
. : . : . : . : . : . :
rJMSF047J03- ACTTTCAACAACATTTTCAGCCATCTAAAACTTAATTTACATGCTCAATTCTCTGTTTGA
                      ____________________________________________________________
consensus ACTTTCAACAACATTTTCAGCCATCTAAAACTTAATTTACATGCTCAATTCTCTGTTTGA
 
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rJMSF047J03- AACTCATAACTTCCATCACTCTGCAGACTCATATCAAACACTGCTGATTTGGAATGATTA
                      ____________________________________________________________
consensus AACTCATAACTTCCATCACTCTGCAGACTCATATCAAACACTGCTGATTTGGAATGATTA
 
. : . : . : . : . : . :
rJMSF047J03- TATTTTGTTTTCCCATTTTGTCTTCTAAATTCGTTTGCACTATTAACTTTATCAGAACTC
                      ____________________________________________________________
consensus TATTTTGTTTTCCCATTTTGTCTTCTAAATTCGTTTGCACTATTAACTTTATCAGAACTC
 
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rJMSF047J03- AATCTCTCCAAGTTAGTGTTATACTTCCTCCGGTTCCCTTTCCTGAAATTATTCTTCATA
                      ____________________________________________________________
consensus AATCTCTCCAAGTTAGTGTTATACTTCCTCCGGTTCCCTTTCCTGAAATTATTCTTCATA
 
. : . : . : . : . : . :
rJMSF047J03- ACCTTATCATTTTTATTGTTGTAAGGCATTCCCTTCGAATTCTGCTCACCTGAATGAGTA
                      ____________________________________________________________
consensus ACCTTATCATTTTTATTGTTGTAAGGCATTCCCTTCGAATTCTGCTCACCTGAATGAGTA
 
. : . : . : . : . : . :
rJMSF047J03- ACATTTCTTTCCCTCCTGTTCAAAGAATTAGTCTTGACCGTGTCCCATTCGAAGCTGGAT
JMSF047J03+ TCGAAGCTGGAT
                      ____________________________________________________________
consensus ACATTTCTTTCCCTCCTGTTCAAAGAATTAGTCTTGACCGTGTCCCATTCGAAGCTGGAT
 
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rJMSF047J03- TTGTTCCTTCCTAATGTCCTATTATCTTCATTCTCATCATCAAACCCATCACTGATATTC
JMSF047J03+ TTGTTCCTTCCTAATGTCCTATTATCTTCATTCTCATCATCAAACCCATCACTGATATTC
                      ____________________________________________________________
consensus TTGTTCCTTCCTAATGTCCTATTATCTTCATTCTCATCATCAAACCCATCACTGATATTC
 
. : . : . : . : . : . :
rJMSF047J03- TCAACTTTTCCATAGGGTTTAATGCTATGAACAACACCTTTGGGGAAAAACCTAGCTGAG
JMSF047J03+ TCAACTTTTCCATAGGGTTTAATGCTATGAACAACACCTTTGGGGAAAAACCTAGCTGAG
                      ____________________________________________________________
consensus TCAACTTTTCCATAGGGTTTAATGCTATGAACAACACCTTTGGGGAAAAACCTAGCTGAG
 
. : . : . : . : . : . :
rJMSF047J03- GGGAGATCAGCTTCGGATTTGAGCAATTCGGGTCCGTCTTTCTCGGACCACATATCA
JMSF047J03+ GGGAGATCAGCTTCGGATTTGAGCAATTCGGGTCCGTCTTTCTCGGACCACATATCAAAC
                      ____________________________________________________________
consensus GGGAGATCAGCTTCGGATTTGAGCAATTCGGGTCCGTCTTTCTCGGACCACATATCAAAC
 
. : . : . : . : . : . :
JMSF047J03+ CCTCCCGGCCTCTGGAACCGGTCAGCCAATACCTTCAGTTGTTCATCGGCGCTGACGGAG
                      ____________________________________________________________
consensus CCTCCCGGCCTCTGGAACCGGTCAGCCAATACCTTCAGTTGTTCATCGGCGCTGACGGAG
 
. : . : . : . : . : . :
JMSF047J03+ AACAAAGTGGGTGCCTTCTCAACCATTTCCCATGGCCTCTCGAGCTCGGAGATGGCGGCT
                      ____________________________________________________________
consensus AACAAAGTGGGTGCCTTCTCAACCATTTCCCATGGCCTCTCGAGCTCGGAGATGGCGGCT
 
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JMSF047J03+ TTGAGCTCGGTACGTTTGCGCATCTCGTATATCTGGCGTTCACGGGCCAGCCGGGCTTTA
                      ____________________________________________________________
consensus TTGAGCTCGGTACGTTTGCGCATCTCGTATATCTGGCGTTCACGGGCCAGCCGGGCTTTA
 
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JMSF047J03+ AGGAGCTGCTTGGACTTCTTCATTTGCATACGCTTCCACTGCCACTTGGAAACCCCTCCT
                      ____________________________________________________________
consensus AGGAGCTGCTTGGACTTCTTCATTTGCATACGCTTCCACTGCCACTTGGAAACCCCTCCT
 
. : . : . : . : . : . :
JMSF047J03+ GGATAGGTCCTGGGGCCTCCACCCATCCGAATCGTCGTCGTTTTGAAGGGAACATTGGCG
                      ____________________________________________________________
consensus GGATAGGTCCTGGGGCCTCCACCCATCCGAATCGTCGTCGTTTTGAAGGGAACATTGGCG
 
. : . : . : . : . : . :
JMSF047J03+ GTGGTTGCTGGGGACAGCCTGAGTTGGGAGAATTTGGTGTCGAGGAATAGGCTTGCAGGA
                      ____________________________________________________________
consensus GTGGTTGCTGGGGACAGCCTGAGTTGGGAGAATTTGGTGTCGAGGAATAGGCTTGCAGGA
 
. : . : . : . : . : . :
JMSF047J03+ GAAGAAAGAGATACGGATGATGAAAGGGATTGTTGGATTGGTTTCATGGCGAAAGATGAC
                      ____________________________________________________________
consensus GAAGAAAGAGATACGGATGATGAAAGGGATTGTTGGATTGGTTTCATGGCGAAAGATGAC
 
. : . : . : . : . : . :
JMSF047J03+ TGAAGGACCGCCATTTTCTTTCTCAAAAAAACCAGAAATTTGATTGCTGATGGGATGTTC
                      ____________________________________________________________
consensus TGAAGGACCGCCATTTTCTTTCTCAAAAAAACCAGAAATTTGATTGCTGATGGGATGTTC