Contig 012166:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008O01Sequence537012166 (4)548010106 (6)gb|KCW47234.1|3e-69hypothetical protein EUGRSUZ_K01043 [Eucalyptus grandis]
JMSF036L20Sequence634012166 (4)682010106 (6)gb|KCW47234.1|2e-106hypothetical protein EUGRSUZ_K01043 [Eucalyptus grandis]
JMSF045K11Sequence796012166 (4)emb|CDP14812.1|1e-47unnamed protein product [Coffea canephora]780010106 (6)gb|KCW47234.1|3e-129hypothetical protein EUGRSUZ_K01043 [Eucalyptus grandis]
JMSF046O20Sequence666012166 (4)emb|CDP14812.1|3e-20unnamed protein product [Coffea canephora]660010106 (6)gb|KCW47234.1|2e-99hypothetical protein EUGRSUZ_K01043 [Eucalyptus grandis]

Alignment

This contig is upended


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JMSF045K11+                                                       CCCTGAATGTAATGTA
                      ____________________________________________________________
consensus                                                         CCCTGAATGTAATGTA
 
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JMSF045K11+           CACCGGTTATTTTTGTTGGTGTACTTATCAATTCAAGGACAGAATTGCCGTTGGATTTCC
                      ____________________________________________________________
consensus             CACCGGTTATTTTTGTTGGTGTACTTATCAATTCAAGGACAGAATTGCCGTTGGATTTCC
 
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JMSF045K11+           TAAAGTCAGGAAATCTAGTAGTCATATTCGCTGAATCTAGGAATCTCCAGGACCCTCTAT
JMSF046O20+                                                                 CTCTAT
                      ____________________________________________________________
consensus             TAAAGTCAGGAAATCTAGTAGTCATATTCGCTGAATCTAGGAATCTCCAGGACCCTCTAT
 
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JMSF045K11+           ATGTCCCTGTTATATTCCAAGCAGAAAATGGACCCAATTGATTGTCATCCTTTTTCACAA
JMSF036L20+                                                          TCCTTTTTCNCAA
JMSF046O20+           ATGTCCCTGTTATATTCCAAGCAGAAAATGGACCCAATTGATTGTCATCCTTTTTCACAA
                      ____________________________________________________________
consensus             ATGTCCCTGTTATATTCCAAGCAGAAAATGGACCCAATTGATTGTCATCCTTTTTCACAA
 
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JMSF045K11+           ACAGCCACTCGTCGCCCCAAGACTGATATCTCTCCTTCAAAGGTCTGAGGCTAGTTACCG
JMSF036L20+           NCANCCNCTNGTCGCCCCAAGNNTGATATNTNTCCTTCAAAGGTNTGAGGNTAGTTNCCG
JMSF046O20+           ACAGCCACTCGTCGCCCCAAGACTGATATCTCTCCTTCAAAGGTCTGAGGCTAGTTACCG
                      ____________________________________________________________
consensus             ACAGCCACTCGTCGCCCCAAGACTGATATCTCTCCTTCAAAGGTCTGAGGCTAGTTACCG
 
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JMSF045K11+           GACAAAATAACAAAAAGGAGAAATACAATCCAAACGTAATTCTAACAAAAACCCCACAAT
JMFF008O01+             CAAAATANCAAAAAGGAGAAATACAATCCAAACGTAATTNTAACAAAAACCCCACAAT
JMSF036L20+           GNCAAAATANCAAAAAGGAGAAATNCAATCCAAACGTAATTCTAACAAAAACCCCACAAT
JMSF046O20+           GACAAAATAACAAAAAGGAGAAATACAATCCAAACGTAATTCTAACAAAAACCCCACAAT
                      ____________________________________________________________
consensus             GACAAAATAACAAAAAGGAGAAATACAATCCAAACGTAATTCTAACAAAAACCCCACAAT
 
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JMSF045K11+           TTCCTCCGCCCACGCCCCAAAGATCCAATCTTTTCAAGGCACCCATTTCAAGATCAGCTC
JMFF008O01+           TTCCTCCGCCCACGCCCCAAAGATCCAATCTTTTCAAGGCACCCATTTCAAGATCAGCTC
JMSF036L20+           TTCCTCCGCCCACGCCCCAAAGATCCAATCTTTTCAAGGCACCCATTTCAAGATCAGCTC
JMSF046O20+           TTCCTCCGCCCACGCCCCAAAGATCCAATCTTTTCAAGGCACCCATTTCAAGATCAGCTC
                      ____________________________________________________________
consensus             TTCCTCCGCCCACGCCCCAAAGATCCAATCTTTTCAAGGCACCCATTTCAAGATCAGCTC
 
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JMSF045K11+           CAACTCTTCTATTCCACGAAACAGCTCCACAGATAGGAGATTTAGAAGATAATTGTAGAG
JMFF008O01+           CAACTCTTCTATTCCACGAAACAGCTCCACAGATAGGAGATTTAGAAGATAATTGTAGAG
JMSF036L20+           CAACTCTTCTATTCCACGAAACAGCTCCACAGATAGGAGATTTAGAAGATAATTGTAGAG
JMSF046O20+           CAACTCTTCTATTCCACGAAACAGCTCCACAGATAGGAGATTTAGAAGATAATTGTAGAG
                      ____________________________________________________________
consensus             CAACTCTTCTATTCCACGAAACAGCTCCACAGATAGGAGATTTAGAAGATAATTGTAGAG
 
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JMSF045K11+           AGAGAGGAACTCTAGGTTGCTTAAAATGAAGTCAACAAATTGAGCTAACGACCCAACAAC
JMFF008O01+           AGAGAGGAACTCTAGGTTGCTTAAAATGAAGTCAACAAATTGAGCTAACGACCCAACAAC
JMSF036L20+           AGAGAGGAACTCTAGGTTGCTTAAAATGAAGTCAACAAATTGAGCTAACGACCCAACAAC
JMSF046O20+           AGAGAGGAACTCTAGGTTGCTTAAAATGAAGTCAACAAATTGAGCTAACGACCCAACAAC
                      ____________________________________________________________
consensus             AGAGAGGAACTCTAGGTTGCTTAAAATGAAGTCAACAAATTGAGCTAACGACCCAACAAC
 
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JMSF045K11+           GAACGACAAGCCAAAGAAATACCCAAAACAACGATCAAGAAAGTGAGAGCTCAACTACTC
JMFF008O01+           GAACGACAAGCCAAAGAAATACCCAAAACAACGATCAAGAAAGTGAGAGCTCAACTACTC
JMSF036L20+           GAACGACAAGCCAAAGAAATACCCAAAACAACGATCAAGAAAGTGAGAGCTCAACTACTC
JMSF046O20+           GAACGACAAGCCAAAGAAATACCCAAAACAACGATCAAGAAAGTGAGAGCTCAACTACTC
                      ____________________________________________________________
consensus             GAACGACAAGCCAAAGAAATACCCAAAACAACGATCAAGAAAGTGAGAGCTCAACTACTC
 
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JMSF045K11+           GTAAGAAGCAGTAGAATTTCCGCTTTGTGCAACGAATTCCCAGTTTCAACAAGCGACGCC
JMFF008O01+           GTAAGAAGCAGTAGAATTTCCGCTTTGTGCAACGAATTCCCAGTTTCAACAAGCGACGCC
JMSF036L20+           GTAAGAAGCAGTAGAATTTCCGCTTTGTGCAACGAATTCCCAGTTTCAACAAGCGACGCC
JMSF046O20+           GTAAGAAGCAGTAGAATTTCCGCTTTGTGCAACGAATTCCCAGTTTCAACAAGCGACGCC
                      ____________________________________________________________
consensus             GTAAGAAGCAGTAGAATTTCCGCTTTGTGCAACGAATTCCCAGTTTCAACAAGCGACGCC
 
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JMSF045K11+           TTCGCCGGTCAATTTCTGAGCCAGAAAATCGTTTCTGCTCCGTACCATTTTATTGAAAGC
JMFF008O01+           TTCGCCGGTCAATTTCTGAGCCGGAAAATCGTTTCTGCTCCGTACCATTTTATTGAAAGC
JMSF036L20+           TTCGCCGGTCAATTTCTGAGCCGGAAAATCGTTTCTGCTCCGTACCATTTTATTGAAAGC
JMSF046O20+           TTCGCCGGTCAATTTCTGAGCCAGAAAATCGTTTCTGCTCCGTACCATTTTATTGAAAGC
                      ____________________________________________________________
consensus             TTCGCCGGTCAATTTCTGAGCCGGAAAATCGTTTCTGCTCCGTACCATTTTATTGAAAGC
 
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JMSF045K11+           AGTTATGAATAAACATTTTACTAGCACTGGAGAATACGCTGCATAGGTGTAGAGAGAGAA
JMFF008O01+           AGTTATGAATAAACATTTTACTAGCACTGGAGAATACGCTGCATAGGTGTAGAGAGAGAA
JMSF036L20+           AGTTATGAATAAACATTTTACTAGCACTGGAGAATACGCTGCATAGGTGTAGAGAGAGAA
JMSF046O20+           AGTTATGAATAAACATTTTACTAGCACTGGAGAATACGCTGCATAGGTGTAGAGAGAGAA
                      ____________________________________________________________
consensus             AGTTATGAATAAACATTTTACTAGCACTGGAGAATACGCTGCATAGGTGTAGAGAGAGAA
 
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JMSF045K11+           AGAGATTGGAGGGGGTTTGAGTTAACTTTCTCTCTCTAAGCTGGTTGCTAAACGCC    
JMFF008O01+           AGAGATTGGAGGGGGTTTGAGTTAACTTTCTCTCTCTAAGCTGGTTGCTAAACGCC    
JMSF036L20+           AGAGATTGGAGGGGGTTTGAGTTAACTTTCTCTCTCTAAGCTGGTTGCTAAACGCC    
JMSF046O20+           AGAGATTGGAGGGGGTTTGAGTTAACTTTCTCTCTCTAAGCTGGTTGCTAAACGCCAATC
                      ____________________________________________________________
consensus             AGAGATTGGAGGGGGTTTGAGTTAACTTTCTCTCTCTAAGCTGGTTGCTAAACGCCAATC