Contig 012137:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C22Sequence466012137 (4)ref|XP_010257634.1|1e-57PREDICTED: superoxide dismutase [Cu-Zn] 2 [Nelumbo nucifera]712012137 (4)ref|XP_006349575.1|2e-86PREDICTED: superoxide dismutase [Cu-Zn] 2-like [Solanum tuberosum]
JMSF042E04Sequence714012137 (4)ref|XP_006349575.1|3e-87PREDICTED: superoxide dismutase [Cu-Zn] 2-like [Solanum tuberosum]672012137 (4)ref|XP_006349575.1|2e-87PREDICTED: superoxide dismutase [Cu-Zn] 2-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF001C22- GTGTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
rJMSF042E04+ GTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
rJMFF001C22+ GTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
JMSF042E04- GTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
                      ____________________________________________________________
consensus GTGTTAGACTATTATTACTGGGCTTCTCCATCTCCGATTCATGGAATAATCGGGA
 
. : . : . : . : . : . :
JMFF001C22- CGGCATAATACGATAGCTTTTATTGCGATGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
rJMSF042E04+ CGGCATAATACGATAGCTTTTATTGCGGTGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
rJMFF001C22+ CGGCATAATACGATAGCTTTTATTGCGATGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
JMSF042E04- CGGCATAATACGATAGCTTTTATTGCGGTGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
                      ____________________________________________________________
consensus CGGCATAATACGATAGCTTTTATTGCGGTGAAAACGAAGTGCAAGGCGGAGAACGGTGGT
 
. : . : . : . : . : . :
JMFF001C22- GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
rJMSF042E04+ GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
rJMFF001C22+ GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
JMSF042E04- GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
                      ____________________________________________________________
consensus GGCAATGGGCGGCCTGAAAGCGGTGGCTATCATCTCCGGCGACCATAACGTCAAAGGCTC
 
. : . : . : . : . : . :
JMFF001C22- TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
rJMSF042E04+ TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
rJMFF001C22+ TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
JMSF042E04- TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
                      ____________________________________________________________
consensus TCTACAATTCATCCAGCAATCCGATGGGGCAACCTACGTGAGAGGAAAAATATCAGGGCT
 
. : . : . : . : . : . :
JMFF001C22- CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
rJMSF042E04+ CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
rJMFF001C22+ CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
JMSF042E04- CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
                      ____________________________________________________________
consensus CAATCCGGGGCTTCACGGTTTCCATATTCATTCTTTCGGTGACACCACCAACGGCTGCAA
 
. : . : . : . : . : . :
JMFF001C22- TTTCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
rJMSF042E04+ TTCCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
rJMFF001C22+ TTTCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
JMSF042E04- TTCCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
                      ____________________________________________________________
consensus TTTCACTGGACCTCACTTTAATCCCTTTAAGAAGGATCATGGAGCTCCAAATCATGAAGA
 
. : . : . : . : . : . :
JMFF001C22- GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
rJMSF042E04+ GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
rJMFF001C22+ GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
JMSF042E04- GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
                      ____________________________________________________________
consensus GCGGCATGCTGGTGATTTAGGCAACATTGTTGCTGGCCCTGATGGGGTTGCTGAGGTTTC
 
. : . : . : . : . : . :
JMFF001C22- AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAG
rJMSF042E04+ AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAGAGCGGTAGT
rJMFF001C22+ AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAGAGCGGTAGT
JMSF042E04- AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAGAGCGGTAGT
                      ____________________________________________________________
consensus AGTTCTGGATATGCAGATTCCTCTAACGGGTGCGAACTCTATTTTGGGAAGAGCGGTAGT
 
. : . : . : . : . : . :
rJMSF042E04+ TGTTCATGCTGATCCTGATGATCTAGGAAGAGGTGGACATGAGCTTAGTAAGACAACTGG
rJMFF001C22+ TGTTCATGCTGATCCTGATGATCTAGGAAGAGGTGGACATGAGCTTAGTAAGACAACTGG
JMSF042E04- TGTTCATGCTGATCCTGATGATCTAGGAAGAGGTGGACATGAGCTTAGTAAGACAACTGG
                      ____________________________________________________________
consensus TGTTCATGCTGATCCTGATGATCTAGGAAGAGGTGGACATGAGCTTAGTAAGACAACTGG
 
. : . : . : . : . : . :
rJMSF042E04+ GAACGCAGGTGCAAGAGTTGGCTGTGGGATTATTGGGCTTCAGTCATCTGTTTAGAGATT
rJMFF001C22+ GAACGCAGGTGCAAGAGTTGGCTGTGGGATTATTGGGCTTCAGTCATCTGTTTAGAGATT
JMSF042E04- GAACGCAGGTGCAAGAGTTGGCTGTGGGATTATTGGGCTTCAGTCATCTGTTTAGAGATT
                      ____________________________________________________________
consensus GAACGCAGGTGCAAGAGTTGGCTGTGGGATTATTGGGCTTCAGTCATCTGTTTAGAGATT
 
. : . : . : . : . : . :
rJMSF042E04+ TCAGTTTCTTTTCCTGCTGAAGAACAGTATTGCAAGTTACAATGTACTGTTTTTTTCTTT
rJMFF001C22+ TCAGTTTCTTTTCCTGCTGAAGAACAGTATTGCAAGTTACAATGTACTGTTTTTTTCTTT
JMSF042E04- TCAGTTTCTTTTCCTGCTGAAGAACAGTATTGCAAGTTACAATGTACTGTTTTTTTCTTT
                      ____________________________________________________________
consensus TCAGTTTCTTTTCCTGCTGAAGAACAGTATTGCAAGTTACAATGTACTGTTTTTTTCTTT
 
. : . : . : . : . : . :
rJMSF042E04+ TCCTGTACCAAATGAT
rJMFF001C22+ TCCTGTACCAAATGATTATCAAAGTATACAGGATTCATCGATTCAGTCACA
JMSF042E04- TCCTGTACCAAATGATTATCAAAGTATACAGGATTCATCGATTCAGTCACAAAAAAAAAA
                      ____________________________________________________________
consensus TCCTGTACCAAATGATTATCAAAGTATACAGGATTCATCGATTCAGTCACAAAAAAAAAA