| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020I02 | Sequence | 595 | 012130 (4) | emb|CDP01232.1| | 3e-34 | unnamed protein product [Coffea canephora] | 716 | 012723 (3) | ref|XP_009620157.1| | 6e-65 | PREDICTED: metal transporter Nramp2-like [Nicotiana tomentosiformis] |
| JMFF025I12 | Sequence | 587 | 012130 (4) | emb|CDP01232.1| | 2e-55 | unnamed protein product [Coffea canephora] | 471 | 012723 (3) | ref|XP_009620157.1| | 5e-11 | PREDICTED: metal transporter Nramp2-like [Nicotiana tomentosiformis] |
| JMFF028A09 | Sequence | 535 | 012130 (4) | emb|CDP01232.1| | 4e-47 | unnamed protein product [Coffea canephora] | |||||
| JMSF041L04 | Sequence | 774 | 012130 (4) | ref|XP_011069767.1| | 1e-69 | PREDICTED: metal transporter Nramp2-like [Sesamum indicum] | 664 | 012723 (3) | |||
This contig is upended
. : . : . : . : . : . :
JMSF041L04+ CCATAGTTTTCAAGAAACAAGAAAATAAAACAATCAAAAGCAGTGATGAGGACAC
____________________________________________________________
consensus CCATAGTTTTCAAGAAACAAGAAAATAAAACAATCAAAAGCAGTGATGAGGACAC
. : . : . : . : . : . :
JMFF025I12+ GATGAAGTCATCACTGAGAATCTTGATGGCAATGGCGCTGCCAATGA
JMSF041L04+ CAACCCAGAGAGGGATGAAGTCATCACTGAGAATCTTGATGGCAATGGCGCTGCCAATGA
____________________________________________________________
consensus CAACCCAGAGAGGGATGAAGTCATCACTGAGAATCTTGATGGCAATGGCGCTGCCAATGA
. : . : . : . : . : . :
JMFF025I12+ CTTCTTGAATATCGGCCCCAATCAAGGCAAGCTCCGCCATGAACCAGAGCAGAAGCGTGG
JMFF020I02+ TCGGCCCCAATCAAGGCAAGCTCCGCCATGAACCAGAGCAGAAGCGTGG
JMFF028A09+ TCGGCCCCAATCAAGGCAAGCTCCGCCATGAACCAGAGCAGAAGCGTGG
JMSF041L04+ CTTCTTGAATATCGGCCCCAATCAAGGCAAGCTCCGCCATGAACCAGAGCAGAAGCGTGG
____________________________________________________________
consensus CTTCTTGAATATCGGCCCCAATCAAGGCAAGCTCCGCCATGAACCAGAGCAGAAGCGTGG
. : . : . : . : . : . :
JMFF025I12+ CCCAGTAAGGATACTCCTCGCGGCAAATCTCGGCCAAGTGGCGGCCGGTGGCGACGCCGA
JMFF020I02+ CCCAGTAAGGATACTCCTCGCGGCAAATCTCGGCCAAGTGGCGGCCGGTGGCGACGCCGA
JMFF028A09+ CCCAGTAAGGATACTCCTCGCGGCAAATCTCGGCCAAGTGGCGGCCGGTGGCGACGCCGA
JMSF041L04+ CCCAGTAAGGATACTCCTCGCGGCAAATCTCGGCCAAGTGGCGGCCGGTGGCGACGCCGA
____________________________________________________________
consensus CCCAGTAAGGATACTCCTCGCGGCAAATCTCGGCCAAGTGGCGGCCGGTGGCGACGCCGA
. : . : . : . : . : . :
JMFF025I12+ GGCGGAGGGAGAGGAGCTGGATGAGAAGGCCCATGGCGGTGGACCACATTAGGACCCAGA
JMFF020I02+ GGCGGAGGGAGAGGAGCTGGATGAGAAGGCCCATGGCGGTGGACCACATTAGGACCCAGA
JMFF028A09+ GGCGGAGGGAGAGGAGCTGGATGAGAAGGCCCATGGCGGTGGACCACATTAGGACCCAGA
JMSF041L04+ GGCGGAGGGAGAGGAGCTGGATGAGAAGGCCCATGGCGGTGGACCACATTAGGACCCAGA
____________________________________________________________
consensus GGCGGAGGGAGAGGAGCTGGATGAGAAGGCCCATGGCGGTGGACCACATTAGGACCCAGA
. : . : . : . : . : . :
JMFF025I12+ GGAGAGAGTAGCCGGCGATTGCTCCGGCTTGGATGTCGCCCTCCAGG-TTCCCCGGATCT
JMFF020I02+ GGAGAGAGTAGCCGGCGATTGCTCCGGCTTGGATGTCGCCCTCCAGGTTTCCCCGGATCT
JMFF028A09+ GGAGAGAGTAGCCGGCGATTGCTCCGGCTTGGATGTCGCCCTCCAGG-TTCCCCGGATCT
JMSF041L04+ GGAGAGAGTAGCCGGCGATTGCTCCGGCTTGGATGTCGCCCTCCAGG-TTCCCCGGATCT
____________________________________________________________
consensus GGAGAGAGTAGCCGGCGATTGCTCCGGCTTGGATGTCGCCCTCCAGG-TTCCCCGGATCT
. : . : . : . : . : . :
JMFF025I12+ AGAAACGCTACGCTCATCAAGAACCCTGGCCCCATGAACTCCCACAGCTTCCTCCACGAG
JMFF020I02+ AGAAACGCTACGCTCATCAAGAACCCTGGCCCCATGAACTCCCACAGCTTCCTCCACGAG
JMFF028A09+ AGAAACGCTACGCTCATCAAGAACCCTGGCCCCATGAACTCCCACAGCTTCCTCCACGAG
JMSF041L04+ AGAAACGCTACGCTCATCAAGAACCCTGGCCCCATGAACTCCCACAGCTTCCTCCACGAG
____________________________________________________________
consensus AGAAACGCTACGCTCATCAAGAACCCTGGCCCCATGAACTCCCACAGCTTCCTCCACGAG
. : . : . : . : . : . :
JMFF025I12+ AACGGCGGCGGGGCATCATCATCGGCGGCGACCTCCATTTCCATTGCCCTGATTTTCTCC
JMFF020I02+ AACGGCGGCGGGGCATCATCATCGGCGGCGACCTCCATTTCCATTGCCCTGATTTTCTCC
JMFF028A09+ AACGGCGGCGGGGCATCATCATCGGCGGCGACCTCCATTTCCATTGCCCTGATTTTCTCC
JMSF041L04+ AACGGCGGCGGGGCATCATCATCGGCGGCGACCTCCATTTCCATTGCCCTGATTTTCTCC
____________________________________________________________
consensus AACGGCGGCGGGGCATCATCATCGGCGGCGACCTCCATTTCCATTGCCCTGATTTTCTCC
. : . : . : . : . : . :
JMFF025I12+ TCCTCCTCCGCCGCCTCCGCCTCCGCCTCGTCGTCATCGGACGGCAAGAGAAAGAGGGAT
JMFF020I02+ TCCTCCTCCGCCGCCTCCGCCTCCGCCTCGTCGTCATCGGACGGCAAGAGAAAGAGGGAT
JMFF028A09+ TCCTCCTCCGCCGCCTCCGCCTCCGCCTCGTCGTCATCGGACGGCAAGAGAAAGAGGGAT
JMSF041L04+ TCCTCCTCCGCCGCCTCCGCCTCCGCCTCGTCGTCATCGGACGGCAAGAGAAAGAGGGAT
____________________________________________________________
consensus TCCTCCTCCGCCGCCTCCGCCTCCGCCTCGTCGTCATCGGACGGCAAGAGAAAGAGGGAT
. : . : . : . : . : . :
JMFF025I12+ TCTCGTTCAAGATTGTCTTCCTCATAATGATGAAGGGTGGTTTCCCGATCCGGCGAGCGT
JMFF020I02+ TCTCGTTCAAGATTGTCTTCCTCATAATGATGAAGGGTGGTTTCCCGATCCGGCGAGCGT
JMFF028A09+ TCTCGTTCAAGATTGTCTTCCTCATAATGATGAAGGGTGGTTTCCCGATCCGGCGAGCGT
JMSF041L04+ TCTCGTTCAAGATTGTCTTCCTCATAATGATGAAGGGTGGTTTCCCGATCCGGCGAGCGT
____________________________________________________________
consensus TCTCGTTCAAGATTGTCTTCCTCATAATGATGAAGGGTGGTTTCCCGATCCGGCGAGCGT
. : . : . : . : . : . :
JMFF025I12+ GAGCTCATCATTTCGTCCCGCATTTCCACCGACGATAATGCTCCTCTGAGATGCAAAGAC
JMFF020I02+ GAGCTCATCATTTCGTCCCGCATTTCCACCGACGATAATGCTCCTCTGAGATGCAAAGAC
JMFF028A09+ GAGCTCATCATTTCGTCCCGCATTTCCACCGACGATAATGCTCCTCTGAGATGCAAAGAC
JMSF041L04+ GAGCTCATCATTTCGTCCCGCATTTCCACCGACGATAATGCTCCTCTGAGATGCAAAGAC
____________________________________________________________
consensus GAGCTCATCATTTCGTCCCGCATTTCCACCGACGATAATGCTCCTCTGAGATGCAAAGAC
. : . : . : . : . : . :
JMFF020I02+ TATGGCATTACGCAAATCAAATGGCCTGAAAAGGCACCGGCAAGGCGAATACTTTTACGA
JMSF041L04+ TATGGCATTACGCAAATCAAATGGCCTGAAAAGGCACCGGCAAGGCGAATACTTTTACGA
____________________________________________________________
consensus TATGGCATTACGCAAATCAAATGGCCTGAAAAGGCACCGGCAAGGCGAATACTTTTACGA
. : . : . : . : . : . :
JMFF020I02+ ACCTAT
JMSF041L04+ ACCTATGACTTGTTTGTGAACACCCATTTCGATCAGCTTATCCGTCACGCACCGCATTCC
____________________________________________________________
consensus ACCTATGACTTGTTTGTGAACACCCATTTCGATCAGCTTATCCGTCACGCACCGCATTCC