Contig 012129:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011B11Sequence497012129 (3)ref|XP_004244756.2|2e-13PREDICTED: transcription factor bHLH113 [Solanum lycopersicum] ref|XP_010324698.
JMSF041K03Sequence747012129 (3)ref|XP_006355783.1|6e-47PREDICTED: transcription factor bHLH113-like isoform X1 [Solanum tuberosum] ref682012129 (3)ref|XP_004244756.2|4e-63PREDICTED: transcription factor bHLH113 [Solanum lycopersicum] ref|XP_010324698.

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN011B11+ GGTGCCAGATGAGAACTGATCTATTGAA
                      ____________________________________________________________
consensus GGTGCCAGATGAGAACTGATCTATTGAA
 
. : . : . : . : . : . :
JMFN011B11+ TAAGAGAAGGGTTTTCCACATTCTCAGAAACTTAATTATATGGAATACAACATTGATGGC
rJMSF041K03- ATGGAATACAACATTGANGGC
                      ____________________________________________________________
consensus TAAGAGAAGGGTTTTCCACATTCTCAGAAACTTAATTATATGGAATACAACATTGATGGC
 
. : . : . : . : . : . :
JMFN011B11+ GGGTGAGTTCCTACAGAGATCATTAATTATACATCTCTTCATTCATGCATATACATTTCA
rJMSF041K03- GGGTGAGTTCCTAGAGAGATCATTAATTATACATCTCTTCATTCATGCATATACATTTCA
                      ____________________________________________________________
consensus GGGTGAGTTCCTAGAGAGATCATTAATTATACATCTCTTCATTCATGCATATACATTTCA
 
. : . : . : . : . : . :
JMFN011B11+ GTTAAACCTGGACAATTAAGAACTAGGATCTATAACTAGCTAAATGATTTACCAAAATAA
rJMSF041K03- GTTAAACCTGGACAATTAAGAACTAGGATCTATAACTAGCTAAATGATTTACCAAAATAA
                      ____________________________________________________________
consensus GTTAAACCTGGACAATTAAGAACTAGGATCTATAACTAGCTAAATGATTTACCAAAATAA
 
. : . : . : . : . : . :
JMFN011B11+ ATCAGCCTCCAGGTTTTGCTGTTAGACATTCGAACCCGAATTCACAACAAACTTCTGGCA
rJMSF041K03- ATCAGCCTCCAGGTTTTGCTGTTAGACATTCGAACCCGAATTCACAACAAACTTCTGGCA
                      ____________________________________________________________
consensus ATCAGCCTCCAGGTTTTGCTGTTAGACATTCGAACCCGAATTCACAACAAACTTCTGGCA
 
. : . : . : . : . : . :
JMFN011B11+ TCCGAGGACGAGGTTTTACCATCCCAGTCTGCAATCTATCTATCACATTCACCGCATTTA
rJMSF041K03- TCCGAGGACGAGGTTTTACCATCCCAGTCTGCAATCTATCTATCACATTCACCGCATTTA
                      ____________________________________________________________
consensus TCCGAGGACGAGGTTTTACCATCCCAGTCTGCAATCTATCTATCACATTCACCGCATTTA
 
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JMFN011B11+ TTTGGTCGTCTTGATTCTTGAATCAGACTCGAGAGCGAGGTTCTAGAACTTCGGGAGAGT
rJMSF041K03- TTTGGTCGTCTTGATTCTTGAATCAGACTCGAGAGCGAGGTTCTAGAACTTCGGGAGAGT
                      ____________________________________________________________
consensus TTTGGTCGTCTTGATTCTTGAATCAGACTCGAGAGCGAGGTTCTAGAACTTCGGGAGAGT
 
. : . : . : . : . : . :
JMFN011B11+ CTTAACAGGGGCCCAGATATCTGCGCCATTGCTACTAGGTACTCCTTCGGTGTATGATAT
rJMSF041K03- CTTAACAGGGGCCCAGATATCTGCGCCATTGCTACTAGGTACTCCTTCGGTGTATGATAT
                      ____________________________________________________________
consensus CTTAACAGGGGCCCAGATATCTGCGCCATTGCTACTAGGTACTCCTTCGGTGTATGATAT
 
. : . : . : . : . : . :
JMFN011B11+ GGGCACGAGGCATAAGCCCTTACTTCTCAAATTGTAGGGGTGCGGTTCC
rJMSF041K03- GGGCACGAGGCATAAGCCCTTACTTCTCAAATTGTAGGGGTGCGGTTCCTGTGTATTAGA
JMSF041K03+ GTAGGGGTGCGGTTCCTGTGTATTAGA
                      ____________________________________________________________
consensus GGGCACGAGGCATAAGCCCTTACTTCTCAAATTGTAGGGGTGCGGTTCCTGTGTATTAGA
 
. : . : . : . : . : . :
rJMSF041K03- CACGGGAGTAGGATGGAGATACGGAGCACTCAACACCTTAACTTGTTCGTGGAGGAAGTT
JMSF041K03+ CACGGGAGTAGGATGGAGATACGGAGCACTCAACACCTTAACTTGTTCGTGGAGGAAGTT
                      ____________________________________________________________
consensus CACGGGAGTAGGATGGAGATACGGAGCACTCAACACCTTAACTTGTTCGTGGAGGAAGTT
 
. : . : . : . : . : . :
rJMSF041K03- TATGTACCCCATTGCTTCATGAAGAACTGAGGCTGTGTCTGTCTTTCCAAATGGTGATAC
JMSF041K03+ TATGTACCCCATTGCTTCATGAAGAACTGAGGCTGTGTCTGTCTTTCCAAATGGTGATAC
                      ____________________________________________________________
consensus TATGTACCCCATTGCTTCATGAAGAACTGAGGCTGTGTCTGTCTTTCCAAATGGTGATAC
 
. : . : . : . : . : . :
rJMSF041K03- AAGCTGCTGCAGAGCTGCAATACGTTCACCAAACTTCTCTTTCTTTTCCTTGGAAGAAAT
JMSF041K03+ AAGCTGCTGCAGAGCTGCAATACGTTCACCAAACTTCTCTTTCTTTTCCTTGGAAGAAAT
                      ____________________________________________________________
consensus AAGCTGCTGCAGAGCTGCAATACGTTCACCAAACTTCTCTTTCTTTTCCTTGGAAGAAAT
 
. : . : . : . : . : . :
rJMSF041K03- AGGCATATCGGCCTTGAGCCGTTTANGTGTCAAAGACGTCATGCTACTGTGG
JMSF041K03+ AGGCATATCGGCCTTGAGCCGTTTAGGTGTCAAAGACGTCATGCTACTGTGGTCAAGAGA
                      ____________________________________________________________
consensus AGGCATATCGGCCTTGAGCCGTTTAGGTGTCAAAGACGTCATGCTACTGTGGTCAAGAGA
 
. : . : . : . : . : . :
JMSF041K03+ GACGGGACCCCTTTTGTGTTCCATCATTTTTTGTTTGAATGCTTCCACTCACACCAATTC
                      ____________________________________________________________
consensus GACGGGACCCCTTTTGTGTTCCATCATTTTTTGTTTGAATGCTTCCACTCACACCAATTC
 
. : . : . : . : . : . :
JMSF041K03+ TAACCATGCAAGATCAGAATCTTCAGAGCTCACTCTGAAACTCAACGGGCTGAAAAATCC
                      ____________________________________________________________
consensus TAACCATGCAAGATCAGAATCTTCAGAGCTCACTCTGAAACTCAACGGGCTGAAAAATCC
 
. : . : . : . : . : . :
JMSF041K03+ TCTATCTCTGCACAAAATCTCTTACTACTTTGCCTAGGGCACAAAAGCGCCTTATTAGCT
                      ____________________________________________________________
consensus TCTATCTCTGCACAAAATCTCTTACTACTTTGCCTAGGGCACAAAAGCGCCTTATTAGCT
 
. : . : . : . : . : . :
JMSF041K03+ TGGGGGCTTGTGGCGGTTCACTGAAAACACAACAGTCGAAAAGAAAGTTTCAATCTTTTT
                      ____________________________________________________________
consensus TGGGGGCTTGTGGCGGTTCACTGAAAACACAACAGTCGAAAAGAAAGTTTCAATCTTTTT
 
. : . : . : . : . : . :
JMSF041K03+ AACTTTTCCTCTCTCTCTCTCTCTCAACGTCTATGTTCACACGGAATTTTGCTGTTTTCA
                      ____________________________________________________________
consensus AACTTTTCCTCTCTCTCTCTCTCTCAACGTCTATGTTCACACGGAATTTTGCTGTTTTCA
 
. : . : . : . : . : . :
JMSF041K03+ AAGCGGTGATCGTGTGTGAGAACTTTAACCCCCCAAAAGCAGACGTTTATGAAATGCGTC
                      ____________________________________________________________
consensus AAGCGGTGATCGTGTGTGAGAACTTTAACCCCCCAAAAGCAGACGTTTATGAAATGCGTC
 
. : . : . : . : . : . :
JMSF041K03+ TGGTCGGAGAAAGGCCGGAAAAGGGTGCCGGTGGATCGCCGGAGACGATTAGACAGGGCT
                      ____________________________________________________________
consensus TGGTCGGAGAAAGGCCGGAAAAGGGTGCCGGTGGATCGCCGGAGACGATTAGACAGGGCT
 
. : . : . : . : . : . :
JMSF041K03+ GAGAGTCTAGTACTCTGGACTCTGCAAGAAGGTGAAAGACAGAGGGAAGAGAACAGGGCC
                      ____________________________________________________________
consensus GAGAGTCTAGTACTCTGGACTCTGCAAGAAGGTGAAAGACAGAGGGAAGAGAACAGGGCC