Contig 012122:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018B10Sequence553012122 (4)ref|XP_002532315.1|9e-47Palmitoyltransferase TIP1, putative [Ricinus communis] gb|EEF30067.1| Palmitoylt750008214 (3)ref|XP_009621389.1|1e-71PREDICTED: protein S-acyltransferase 24 [Nicotiana tomentosiformis]
JMFF020A06Sequence527012122 (4)gb|KJB64637.1|2e-24hypothetical protein B456_010G059000 [Gossypium raimondii]682008214 (3)ref|XP_002532314.1|3e-38zinc finger protein, putative [Ricinus communis] gb|EEF30066.1| zinc finger prot
JMFS048A12Sequence585012122 (4)gb|KJB64637.1|3e-24hypothetical protein B456_010G059000 [Gossypium raimondii]
JMSF040M08Sequence661012122 (4)ref|XP_002532315.1|6e-68Palmitoyltransferase TIP1, putative [Ricinus communis] gb|EEF30067.1| Palmitoylt877008214 (3)emb|CAN67938.1|5e-72hypothetical protein VITISV_014238 [Vitis vinifera]

Alignment

This contig is upended


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JMSF040M08+                                                                      T
                      ____________________________________________________________
consensus                                                                        T
 
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JMSF040M08+           ACAATATAATAAATAAAAGCTGTCTGACCATATTGTGCAGCAACATGTATTGCCTGATAT
                      ____________________________________________________________
consensus             ACAATATAATAAATAAAAGCTGTCTGACCATATTGTGCAGCAACATGTATTGCCTGATAT
 
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JMSF040M08+           CCATATGTATCAGCCGTATTTACCCGAGCACCCTCTTGGAGTAAAAGTTCTGCAACCTGG
                      ____________________________________________________________
consensus             CCATATGTATCAGCCGTATTTACCCGAGCACCCTCTTGGAGTAAAAGTTCTGCAACCTGG
 
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JMSF040M08+           ATTGCACCTCGAACTGCACTCCAATGTAATGCTGTTTGTCCTGTATGATCCGCAGCATTG
                      ____________________________________________________________
consensus             ATTGCACCTCGAACTGCACTCCAATGTAATGCTGTTTGTCCTGTATGATCCGCAGCATTG
 
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JMFF020A06+                         CTCAATTATGTATTGCGCAGCGGCAGAGCGGTTGTTAAGAGCGGCC
JMFF018B10+                         CTCAATTATGTATTGCGCAGCGGCAGAGCGGTTGTTAAGAGCGGCC
JMFS048A12+                         CTCAATTATGTATTGCGCAGCGGCAGAGCGGTTGTTAAGAGCGGCC
JMSF040M08+           ACATCTCCTCCATGCTCAATTATGTATTGCGCAGCGGCAGAGCGGTTGTTAAGAGCGGCC
                      ____________________________________________________________
consensus             ACATCTCCTCCATGCTCAATTATGTATTGCGCAGCGGCAGAGCGGTTGTTAAGAGCGGCC
 
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JMFF020A06+           CACTGGAGGGCGTAGTAGCCGAGGCCATCGGACTCAGATACTGAGCATCCCTCGCTCTCG
JMFF018B10+           CACTGGAGGGCGTAGTAGCCGAGGCCATCGGACTCAGATACTGAGCATCCCTCGCTCTCG
JMFS048A12+           CACTGGAGGGCGTAGTAGCCGAGGCCATCGGACTCAGATACTGAGCATCCCTCGCTCTCG
JMSF040M08+           CACTGGAGGGCGTAGTAGCCGAGGCCATCGGACTCAGATACTGAGCATCCCTCGCTCTCG
                      ____________________________________________________________
consensus             CACTGGAGGGCGTAGTAGCCGAGGCCATCGGACTCAGATACTGAGCATCCCTCGCTCTCG
 
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JMFF020A06+           ACTAATCTCTGTAGCTTCTCCACGTCACCGTACGCCGCCGCCGTGTAAACATCGTTCTTC
JMFF018B10+           ACTAATCTCTGTAGCTTCTCCACGTCACCGTACGCCGCCGCCGTGTAAACATCGTTCTTC
JMFS048A12+           ACTAATCTCTGTAGCTTCTCCACGTCACCGTACGCCGCCGCCGTGTAAACATCGTTCTTC
JMSF040M08+           ACTAATCTCTGTAGCTTCTCCACGTCACCGTACGCCGCCGCCGTGTAAACATCGTTCTTC
                      ____________________________________________________________
consensus             ACTAATCTCTGTAGCTTCTCCACGTCACCGTACGCCGCCGCCGTGTAAACATCGTTCTTC
 
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JMFF020A06+           GCGCTCTCATCCTCCGCCGCCTCGGCTGAAGCGGCTCCATCATTCGCTGCCGCCGCCGCC
JMFF018B10+           GCGCTCTCATCCTCCGCCGCCTCGGCTGAAGCGGCTCCATCATTCGCTGCCGCCGCCGCC
JMFS048A12+           GCGCTCTCATCCTCCGCCGCCTCGGCTGAAGCGGCTCCATCATTCGCTGCCGCCGCCGCC
JMSF040M08+           GCGCTCTCATCCTCCGCCGCCTCGGCTGAAGCGGCTCCATCATTCGCTGCCGCCGCCGCC
                      ____________________________________________________________
consensus             GCGCTCTCATCCTCCGCCGCCTCGGCTGAAGCGGCTCCATCATTCGCTGCCGCCGCCGCC
 
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JMFF020A06+           GCCGCATTTTCCTGATCTCTGGATTCCACCTCCTCCACGATCTCGATCTCCGACGCCATC
JMFF018B10+           GCCGCATTTTCCTGATCTCTGGATTCCACCTCCTCCACGATCTCGATCTCCGACGCCATC
JMFS048A12+           GCCGCATTTTCCTGATCTCTGGATTCCACCTCCTCCACGATCTCGATCTCCGACGCCATC
JMSF040M08+           GCCGCATTTTCCTGATCTCTGGATTCCACCTCCTCCACGATCTCGATCTCCGACGCCATC
                      ____________________________________________________________
consensus             GCCGCATTTTCCTGATCTCTGGATTCCACCTCCTCCACGATCTCGATCTCCGACGCCATC
 
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JMFF020A06+           ACGTAAATAATAAAAGTTAATAGTATTCAGCTTCGAAATTACGTATACAAGCAATTCCGT
JMFF018B10+           ACGTAAATAATAAAAGTTAATAGTATTCAGCTTCGAAATTACGTATACAAGCAATTCCGT
JMFS048A12+           ACGTAAATAATAAAAGTTAATAGTATTCAGCTTCGAAATTACGTATACAAGCAATTCCGT
JMSF040M08+           ACGTAAATAATAAAAGTTAATAGTATTCAGCTTCGAAATTACGTATACAAGCAATTCCGT
                      ____________________________________________________________
consensus             ACGTAAATAATAAAAGTTAATAGTATTCAGCTTCGAAATTACGTATACAAGCAATTCCGT
 
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JMFF020A06+           ACACGCGCAGATGCGACGCCTAGAGGTTTTGGTCGGAAGGAGGAGGTGAGGGGACGAGTT
JMFF018B10+           ACACGCGCAGATGCGACGCCTAGAGGTTTTGGTCGGAAGGAGGAGGTGAGGGGACGAGTT
JMFS048A12+           ACACGCGCAGATGCGACGCCTAGAGGTTTTGGTCGGAAGGAGGAGGTGAGGGGACGAGTT
JMSF040M08+           ACACGCGCAGATGCGACGCCTAGAGGTTTTGGTCGGAAGGAGGAGGTGAGGGGACGAGTT
                      ____________________________________________________________
consensus             ACACGCGCAGATGCGACGCCTAGAGGTTTTGGTCGGAAGGAGGAGGTGAGGGGACGAGTT
 
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JMFF020A06+           AGGAAGGGGCTTGACTCGGTTACGGGGGGCTATACAGAGAGATGCCCAGAAGCCAACTC 
JMFF018B10+           AGGAAGGGGCTTGACTCGGTTACGGGGGGCTATACAGAGAGATGCCCAG           
JMFS048A12+           AGGAAGGGGCTTGACTCGGTTACGGGGGGCT                             
JMSF040M08+           AGGAAGGGGCTTGACTCGGTTACGGGGGGCTATACAGAGAGATGCCCAGAAGCCAACTCC
                      ____________________________________________________________
consensus             AGGAAGGGGCTTGACTCGGTTACGGGGGGCTATACAGAGAGATGCCCAGAAGCCAACTCC