Contig 012118:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS030E05Sequence636012118 (5)ref|XP_009590042.1|3e-54PREDICTED: neurofilament heavy polypeptide-like isoform X4 [Nicotiana tomentosi
JMFS069F10Sequence638012118 (5)ref|XP_009590042.1|6e-55PREDICTED: neurofilament heavy polypeptide-like isoform X4 [Nicotiana tomentosi
JMFS075D05Sequence627012118 (5)ref|XP_009590042.1|7e-57PREDICTED: neurofilament heavy polypeptide-like isoform X4 [Nicotiana tomentosi
JMFS084D07Sequence621012118 (5)ref|XP_009590042.1|2e-54PREDICTED: neurofilament heavy polypeptide-like isoform X4 [Nicotiana tomentosi
JMSF040F09Sequence673012118 (5)ref|XP_009590042.1|5e-54PREDICTED: neurofilament heavy polypeptide-like isoform X4 [Nicotiana tomentosi876010062 (2)ref|XP_011081489.1|4e-21PREDICTED: hepatoma-derived growth factor-related protein 2 [Sesamum indicum] r

Alignment

This contig is upended


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JMFS075D05+                                                      AAACATCTCAATGATAA
JMFS084D07+                                                             TCAATGATAA
JMFS069F10+                                                            CTCAATGATAA
JMFS030E05+                                                            CTCAATGATAA
JMSF040F09+                                                            CTCAATGATAA
                      ____________________________________________________________
consensus                                                        AAACATCTCAATGATAA
 
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JMFS075D05+           GTCCATCGCATTCCAGATCCAACATGACAACACATGACCTAACCTTTGCAACAGTTTCAA
JMFS084D07+           GTCCATCGCATTCCAGATCCAACATGACAACACATGACCTAACCTTTGCAACAGTTTCAA
JMFS069F10+           GTCCATCGCATTCCAGATCCAACATGACAACACATGACCTAACCTTTGCAACAGTTTCAA
JMFS030E05+           GTCCATCGCATTCCAGATCCAACATGACAACACATGACCTAACCTNTGCAACAGTTTCAA
JMSF040F09+           GTCCATCGCATTCCAGATCCAACATGACAACACATGACCTAACCTTTGCAACAGTTTCAA
                      ____________________________________________________________
consensus             GTCCATCGCATTCCAGATCCAACATGACAACACATGACCTAACCTTTGCAACAGTTTCAA
 
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JMFS075D05+           GAATAAAGGCCCTCTTATTGAATGATTTGCTTGAGTCATCATATAAATTCTCAAAAATTG
JMFS084D07+           GAATAAAGGCCCTCTTATTGAATGATTTGCTTGAGTCATCATATAAATTCTCAAAAATTG
JMFS069F10+           GAATAAAGGCCCTCTTATTGAATGATTTGCTTGAGTCATCATATAAATTCTCAAAAATTG
JMFS030E05+           GAATAAAGGCCCTCTTATTGAATGATTTGCTTGAGTCATCATATAAATTCTCAAAAATTG
JMSF040F09+           GAATAAAGGCCCTCTTATTGAATGATTTGCTTGAGTCATCATATAAATTCTCAAAAATTG
                      ____________________________________________________________
consensus             GAATAAAGGCCCTCTTATTGAATGATTTGCTTGAGTCATCATATAAATTCTCAAAAATTG
 
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JMFS075D05+           AGACTATTAATTGGAAGACCTCCTTCATCTTCTCATCATCATATGGAGCATCTGGTGCGC
JMFS084D07+           AGACTATTAATTGGAAGACCTCCTTCATCTTCTCATCATCATATGGAGCATCTGGTGCGC
JMFS069F10+           AGACTATTAATTGGAAGACCTCCTTCATCTTCTCATCATCATATGGAGCATCTGGTGCGC
JMFS030E05+           AGACTATTAATTGGAAGACCTCCTTCATCTTCTCATCATCATATGGAGCATCTGGTGCGC
JMSF040F09+           AGACTATTAATTGGAAGACCTCCTTCATCTTCTCATCATCATATGGAGCATCTGGTGCGC
                      ____________________________________________________________
consensus             AGACTATTAATTGGAAGACCTCCTTCATCTTCTCATCATCATATGGAGCATCTGGTGCGC
 
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JMFS075D05+           TAATCCTGGTAATCTCACTTAAGCAAAAAGCAACTGCAACCTTCACATCAGCATCAGGAT
JMFS084D07+           TAATCCTGGTAATCTCACTTAAGCAAAAAGCAACTGCAACCTTCACATCAGCATCAGGAT
JMFS069F10+           TAATCCTGGTAATCTCACTTAAGCAAAAAGCAACTGCAACCTTCACATCAGCATCAGGAT
JMFS030E05+           TAATCCTGGTAATCTCACTTAAGCAAAAAGCAACTGCAACCTTCACATCAGCATCAGGAT
JMSF040F09+           TAATCCTGGTAATCTCACTTAAGCAAAAAGCAACTGCAACCTTCACATCAGCATCAGGAT
                      ____________________________________________________________
consensus             TAATCCTGGTAATCTCACTTAAGCAAAAAGCAACTGCAACCTTCACATCAGCATCAGGAT
 
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JMFS075D05+           GCCTCATAAATTTATCCACAATCAGTGCCTTCATTAACGGAGAAAGTGCATCACGCATGG
JMFS084D07+           GCCTCATAAATTTATCCACAATCAGTGCCTTCATTAACGGAGAAAGTGCATCACGCATGG
JMFS069F10+           GCCTCATAAATTTATCCACAATCAGTGCCTTCATTAACGGAGAAAGTGCATCACGCATGG
JMFS030E05+           GCCTCATAAATTTATCCACAATCAGTGCCTTCATTAACGGAGAAAGTGCATCACGCATGG
JMSF040F09+           GCCTCATAAATTTATCCACAATCAGTGCCTTCATTAACGGAGAAAGTGCATCACGCATGG
                      ____________________________________________________________
consensus             GCCTCATAAATTTATCCACAATCAGTGCCTTCATTAACGGAGAAAGTGCATCACGCATGG
 
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JMFS075D05+           ACTTGGCTGGTGCTTGCTTCACTTTTAACAGGAAGGACTCAACTTGCTCAAGCAAATGGA
JMFS084D07+           ACTTGGCTGGTGCTTGCTTCACTTTTAACAGGAAGGACTCAACTTGCTCAAGCAAATGGA
JMFS069F10+           ACTTGGCTGGTGCTTGCTTCACTTTTAACAGGAAGGACTCAACTTGCTCAAGCAAATGGA
JMFS030E05+           ACTTGGCTGGTGCTTGCTTCACTTTTAACAGGAAGGACTCAACTTGCTCAAGCAAATGGA
JMSF040F09+           ACTTGGCTGGTGCTTGCTTCACTTTTAACAGGAAGGACTCAACTTGCTCAAGCAAATGGA
                      ____________________________________________________________
consensus             ACTTGGCTGGTGCTTGCTTCACTTTTAACAGGAAGGACTCAACTTGCTCAAGCAAATGGA
 
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JMFS075D05+           GGAGCTCAACAACTGAAGACGGCGGTTGAAGAAGCTTCTTCCCAGCTTCCACTAACTGCT
JMFS084D07+           GGAGCTCAACAACTGAAGACGGCGGTTGAAGAAGCTTCTTCCCAGCTTCCACTAACTGCT
JMFS069F10+           GGAGCTCAACAACTGAAGACGGCGGTTGAAGAAGCTTCTTCCCAGCTTCCACTAACTGCT
JMFS030E05+           GGAGCTCAACAACTGAAGACGGCGGTTGAAGAAGCTTCTTCCCAGCTTCCACTAACTGCT
JMSF040F09+           GGAGCTCAACAACTGAAGACGGCGGTTGAAGAAGCTTCTTCCCAGCTTCCACTAANTGCT
                      ____________________________________________________________
consensus             GGAGCTCAACAACTGAAGACGGCGGTTGAAGAAGCTTCTTCCCAGCTTCCACTAACTGCT
 
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JMFS075D05+           CCTCCAGCTCACTCTGAGAAGACGGCATCGTTTCAGTAGCTTACACAGCAAAACCAACGG
JMFS084D07+           CCTCCAGCTCACTCTGAGAAGACGGCATCGTTTCAGTAGCTTACACAGCAAAACCAACGG
JMFS069F10+           CCTCCAGCTCACTCTGAGAAGACGGCATCGTTTCAGTAGCTTACACAGCAAAACCAACGG
JMFS030E05+           CCTCCAGCTCACTCTGAGAAGACGGCATCGTTTCAGTAGCTTACACAGCAAAACCAACGG
JMSF040F09+           CCTCCAGCTCACTCTGAGAAGACGGCATCGTTTCAGTAGCTTACACAGCAAAACCAACGG
                      ____________________________________________________________
consensus             CCTCCAGCTCACTCTGAGAAGACGGCATCGTTTCAGTAGCTTACACAGCAAAACCAACGG
 
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JMFS075D05+           TTCCCGCTCAGACAATCGAGAAGAGCAAGAAATTAACGCAGCCCCGGAGAGAGCAAGGGA
JMFS084D07+           TTCCCGCTCAGACAATCGAGAAGAGCAAGAAATTAACGCAGCCCCGGAGAGAGCAAGGGA
JMFS069F10+           TTCCCGCTCAGACAATCGAGAAGAGCAAGAAATTAACGCAGCCCCGGAGAGAGCAAGGGA
JMFS030E05+           TTCCCGCTCAGACAATCGAGAAGAGCAAGAAATTAACGCAGCCCCGGAGAGAGCAAGGGA
JMSF040F09+           TTCCCGCTCAGACAATCGAGAAGAGCAAGAAATTAACGCAGCCCCGGAGAGAGCAAGGGA
                      ____________________________________________________________
consensus             TTCCCGCTCAGACAATCGAGAAGAGCAAGAAATTAACGCAGCCCCGGAGAGAGCAAGGGA
 
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JMFS075D05+           GCTTCATCGTCCTCCTATGGATTCTCGTTCGGTTCCGTCTAAGGATTACGGTCTCCCCCC
JMFS084D07+           GCTTCATCGTCCTCCTATGGATTCTCGTTCGGTTCCGTCTAAGGATTACGGTCTCCCCCC
JMFS069F10+           GCTTCATCGTCCTCCTATGGATTCTCGTTCGGTTCCGTCTAAGGATTACGGTCTCCCCCC
JMFS030E05+           GCTTCATCGTCCTCCTATGGATTCTCGTTCGGTTCCGTCTAAGGATTACGGTCTCCCCCC
JMSF040F09+           GCTTCATCGTCCTCCTATGGATTCTCGTTCGGTTCCGTCTAAGGATTACGGTCTCCCCCC
                      ____________________________________________________________
consensus             GCTTCATCGTCCTCCTATGGATTCTCGTTCGGTTCCGTCTAAGGATTACGGTCTCCCCCC
 
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JMFS075D05+           CTCTGTCGGA                                                  
JMFS084D07+           CTCTGTCGGAG                                                 
JMFS069F10+           CTCTGTCGGAGAGAGCTCCCGGAAC                                   
JMFS030E05+           CTCTGTCGGAGAGAGCTCCCGGAAC                                   
JMSF040F09+           CTCTGTCGGAGAGAGCTCCCGGAACCCTTGAAAACCAGCAAAGCCCCAAATGAACCAACC
                      ____________________________________________________________
consensus             CTCTGTCGGAGAGAGCTCCCGGAACCCTTGAAAACCAGCAAAGCCCCAAATGAACCAACC