Contig 012112:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032B03Sequence555012112 (6)ref|XP_011091432.1|8e-93PREDICTED: myb family transcription factor APL-like isoform X2 [Sesamum indicum679012112 (6)ref|XP_008380567.1|5e-53PREDICTED: myb family transcription factor APL isoform X2 [Malus domestica]
JMSF008B11Sequence256012112 (6)473012112 (6)gb|KDO61177.1|4e-10hypothetical protein CISIN_1g021481mg [Citrus sinensis]
JMSF039B08Sequence638012112 (6)ref|XP_011091432.1|2e-109PREDICTED: myb family transcription factor APL-like isoform X2 [Sesamum indicum815012112 (6)ref|XP_002300173.2|4e-86myb family transcription factor family protein [Populus trichocarpa] gb|EEE84978

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF008B11- TTTTTAAGATCAAGCAAGCTGCCCAGGGTGCATTGGTTTCCATTGAGAGG
rJMFF032B03- GTTTCCATTGAGAGG
rJMSF039B08- GTTTCCATTGAGAGG
                      ____________________________________________________________
consensus TTTTTAAGATCAAGCAAGCTGCCCAGGGTGCATTGGTTTCCATTGAGAGG
 
. : . : . : . : . : . :
rJMSF008B11- CGTTTGAATATCAAACGTAGAGAATATACATAAGATTGTGCAGTTTTGCAACATGTCAGA
rJMFF032B03- CGTTTGAATATCAAACGTAGAGAATATACATAAGATTGTGCAGTTTTGCAACATGTCAGA
rJMSF039B08- CGTTTGAATATCAAACGTAGAGAATATACATAAGATTGTGCAGTTTTGCAACATGTCAGA
                      ____________________________________________________________
consensus CGTTTGAATATCAAACGTAGAGAATATACATAAGATTGTGCAGTTTTGCAACATGTCAGA
 
. : . : . : . : . : . :
rJMSF008B11- TTGATGAGAAACATTAAAATGATTACATTGTTCACGAGAACCAGAGACAACCTAGTTTTT
rJMFF032B03- TTGATGAGAAACATTAAAATGATTACATTGTTCACGAGAACCAGAGACAACCTAG-TTTT
rJMSF039B08- TTGATGAGAAACATTAAAATGATTACATTGTTCACGAGAACCAGAGACAACCTAGTTTTT
                      ____________________________________________________________
consensus TTGATGAGAAACATTAAAATGATTACATTGTTCACGAGAACCAGAGACAACCTAGTTTTT
 
. : . : . : . : . : . :
rJMSF008B11- TTACCCGGCATTAGCCAGTGTCCATTCCACCTGCTGCTTCATGTTGCTGTCCAGAGGCAA
rJMFF032B03- TTACCCGGCATTAGCCAGTGTCCATTCCACCTGCTGCTTCATGTTGCTGTCCAGAGGCAA
JMSF008B11+ TGTCCAGAGGCAA
rJMSF039B08- TTACCCGGCATTAGCCAGTGTCCATTCCACCTGCTGCTTCATGTTGCTGTCCAGAGGCAA
                      ____________________________________________________________
consensus TTACCCGGCATTAGCCAGTGTCCATTCCACCTGCTGCTTCATGTTGCTGTCCAGAGGCAA
 
. : . : . : . : . : . :
rJMSF008B11- AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
rJMFF032B03- AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
JMSF008B11+ AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
rJMSF039B08- AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
                      ____________________________________________________________
consensus AGACTCCTCGTTAGTAAACCCCCGAGGTCTCTTCTTCAGTGCAGCTAGCGAACTCATGCT
 
. : . : . : . : . : . :
rJMSF008B11- CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
rJMFF032B03- CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
JMSF008B11+ CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
rJMSF039B08- CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
                      ____________________________________________________________
consensus CATTGTGGAAGCGGGAGTTCCATTCGATGTCAAGCAATCTACAGCAATGTCGGGTAACGA
 
. : . : . : . : . : . :
rJMSF008B11- AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
rJMFF032B03- AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
JMSF008B11+ AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
rJMSF039B08- AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
                      ____________________________________________________________
consensus AGGGAGGGGAAAGATTGTGTGAGGATCGTTAGCTACCTTTATTGACAGCTCGGAGAGCTC
 
. : . : . : . : . : . :
rJMSF008B11- TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
rJMFF032B03- TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
JMSF008B11+ TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
rJMSF039B08- TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
JMSF039B08+ TCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
                      ____________________________________________________________
consensus TTCCCGGGCAGCTTCTAATCCATCAGCTGCAACAGCCTGGTGGTTAAGCGTTTTGCAAGC
 
. : . : . : . : . : . :
rJMSF008B11- TTT
rJMFF032B03- TTTCTCGAGAATCGATTGCAAATATTTGCTTTGAGCTTCTATACGAAGCTGGAGACGACG
JMSF008B11+ TTT
rJMSF039B08- TTTCTCGAGAATCGATTGCAAATATTTGCTTTGAGCTTCTATACGAAGCTGGAGACGACG
JMFF032B03+ GAAGCTGGAGACGACG
JMSF039B08+ TTTCTCGAGAATCGATTGCAAATATTTGCTTTGAGCTTCTATACGAAGCTGGAGACGACG
                      ____________________________________________________________
consensus TTTCTCGAGAATCGATTGCAAATATTTGCTTTGAGCTTCTATACGAAGCTGGAGACGACG
 
. : . : . : . : . : . :
rJMFF032B03- TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
rJMSF039B08- TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
JMFF032B03+ TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
JMSF039B08+ TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
                      ____________________________________________________________
consensus TTGAACCTCTAGCTGCTTGTGCAATTTTCGTTGGACTTCCATCTGAGCTCGTAAAGCCTC
 
. : . : . : . : . : . :
rJMFF032B03- GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
rJMSF039B08- GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
JMFF032B03+ GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
JMSF039B08+ GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
                      ____________________________________________________________
consensus GGTAACCTGGTAGCCATCGTTTAGTTCCTGGGCAATCATTCTAGACGAGCCCGATGTAGG
 
. : . : . : . : . : . :
rJMFF032B03- GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAG
rJMSF039B08- GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAGAGTTGTCAGTTGCCTC
JMFF032B03+ GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAGAGTTGTCAGTTGCCTC
JMSF039B08+ GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAGAGTTGTCAGTTGCCTC
                      ____________________________________________________________
consensus GGAACCAATGTCCTGACTCTCCGCTACACATGATGCATCTTTAGAGTTGTCAGTTGCCTC
 
. : . : . : . : . : . :
rJMSF039B08- CTTGGATGATTGCTTCCCGAGACGGTATTTCTGAAGGTGAGACTTTAAATGATATAAGGT
JMFF032B03+ CTTGGATGATTGCTTCCCGAGACGGTATTTCTGAAGGTGAGACTTTAAATGATATAAGGT
JMSF039B08+ CTTGGATGATTGCTTCCCGAGACGGTATTTCTGAAGGTGAGACTTTAAATGATATAAGGT
                      ____________________________________________________________
consensus CTTGGATGATTGCTTCCCGAGACGGTATTTCTGAAGGTGAGACTTTAAATGATATAAGGT
 
. : . : . : . : . : . :
rJMSF039B08- CAGGCCTTTCACCCCCATTGTCCTCATAATTGATTTTGGTGTCGCTTTGTCGGGGCCGC
JMFF032B03+ CAGGCCTTTCACCCCCATTGTCCTCATAATTGATTTTGGTGTCGCTTTGTCGGGGCCGCC
JMSF039B08+ CAGGCCTTTCACCCCCATTGTCCTCATAATTGATTTTGGTGTCGCTTTGTCGGGGCCGCC
                      ____________________________________________________________
consensus CAGGCCTTTCACCCCCATTGTCCTCATAATTGATTTTGGTGTCGCTTTGTCGGGGCCGCC
 
. : . : . : . : . : . :
JMFF032B03+ GAGCTGGGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCGGAGGTCCAGCGGAGGCGAGG
JMSF039B08+ GAGCTGGGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCGGAGGTCCAGCGGAGGCGAGG
                      ____________________________________________________________
consensus GAGCTGGGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCGGAGGTCCAGCGGAGGCGAGG
 
. : . : . : . : . : . :
JMFF032B03+ CTTGGGATCGGCGGTGAGAACAAGACAAGCATCTCCGGGAAGGTTGGTTCCGTCCAAGGA
JMSF039B08+ CTTGGGATCGGCGGTGAGAACAAGACAAGCATCTCCGGGAAGGTTGGTTCCGTCCAAGGA
                      ____________________________________________________________
consensus CTTGGGATCGGCGGTGAGAACAAGACAAGCATCTCCGGGAAGGTTGGTTCCGTCCAAGGA
 
. : . : . : . : . : . :
JMFF032B03+ CAGAGCTCCCTGGTGGTTGTGGTGGTTATAGTCGCCGCCGTCTAGCCCCAGACCCCGGAG
JMSF039B08+ CAGAGCTCCCTGGTGGTTGTGGTGGTTATAGTCGCCGCCGTCTAGCCCCAGACCCCGGAG
                      ____________________________________________________________
consensus CAGAGCTCCCTGGTGGTTGTGGTGGTTATAGTCGCCGCCGTCTAGCCCCAGACCCCGGAG
 
. : . : . : . : . : . :
JMFF032B03+ AGGCACCGCCGAGTACATTTTTTCACGGCAGCCCGCAGTAGCAGACGACAACCCAAGCC
JMSF039B08+ AGGCACCGCCGAGTACATTTTTTCACGGCAGCCCGCAGTAGCAGACGACAACCCCAGCCC
                      ____________________________________________________________
consensus AGGCACCGCCGAGTACATTTTTTCACGGCAGCCCGCAGTAGCAGACGACAACCCCAGCCC