Contig 012111:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038P24Sequence700012111 (2)860023594ref|XP_002264986.2|170PREDICTED: NAC domain-containing protein 7-like [Vitis vinifera] ref|XP_01066240
JMSF046A09Sequence687001633 (7)ref|XP_010109124.1|2e-19hypothetical protein L484_000282 [Morus notabilis] gb|EXC55735.1| hypothetical p611012111 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+                     TTCGACATTTAGCTAAGGGTTTTGCATACATTTTTTTGTTTTTTAACCT
                      ____________________________________________________________
consensus                        TTCGACATTTAGCTAAGGGTTTTGCATACATTTTTTTGTTTTTTAACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          TAATTTGAATCATCAATTCCCTCATCCATGGCTTCCACATTTTCATAAAGGACTGAAGCT
                      ____________________________________________________________
consensus             TAATTTGAATCATCAATTCCCTCATCCATGGCTTCCACATTTTCATAAAGGACTGAAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          ATATATACATTTCACAAGTTCAATTCGTCTCAGCTTTCTGGCAATCTTTCTCGCTGTAAG
                      ____________________________________________________________
consensus             ATATATACATTTCACAAGTTCAATTCGTCTCAGCTTTCTGGCAATCTTTCTCGCTGTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          TACTGTGATTTTTGCAGGGTAATTAAATACCTTCATCTTCTCCAGTAACATCAATCTTCA
                      ____________________________________________________________
consensus             TACTGTGATTTTTGCAGGGTAATTAAATACCTTCATCTTCTCCAGTAACATCAATCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          ATTCTATCGTATGATCTCTTCCCTTCTAATTTTCTGAAAATTTTATGTATATTTTTCCAG
                      ____________________________________________________________
consensus             ATTCTATCGTATGATCTCTTCCCTTCTAATTTTCTGAAAATTTTATGTATATTTTTCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          TGACCCCTGCTAAGTTGGCCAATGAGAGCGGTCTATTGAACTTCTCGGTTTGTGCCGATC
JMSF038P24-           TGACCCCTGCTAAGTTGGCCAATGAGAGCGGTCTATTGAACTTCTCGGTTTGTGCCGATC
                      ____________________________________________________________
consensus             TGACCCCTGCTAAGTTGGCCAATGAGAGCGGTCTATTGAACTTCTCGGTTTGTGCCGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          AGCTAAGCTAAGTAGTGGTTGCACGTTTCCCTAATCATTTGAAAATTCTATGTATATTTT
JMSF038P24-           AGCTAAGCTAAGTAGTGGTTGCACGTTTCCCTAATCATTTGAAAATTCTATGTATATTTT
                      ____________________________________________________________
consensus             AGCTAAGCTAAGTAGTGGTTGCACGTTTCCCTAATCATTTGAAAATTCTATGTATATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          TTGCCTGCATGCAAGGCCGGTGCTTTGAAGTAAAGTCCATATTTAGCATAATGCATATGT
JMSF038P24-           TTGCCTGCATGCAAGGCCGGTGCTTTGAAGTAAAGTCCATATTTAGCATAATGCATATGT
                      ____________________________________________________________
consensus             TTGCCTGCATGCAAGGCCGGTGCTTTGAAGTAAAGTCCATATTTAGCATAATGCATATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          TTTTGCTGCATTCACCATACTTGCAACTTTAATTCTAGGCTGATATATCCTATCTAACCT
JMSF038P24-           TTTTGCTGCATTCACCATACTTGCAACTTTAATTCTAGGCTGATATATCCTATCTAACCT
                      ____________________________________________________________
consensus             TTTTGCTGCATTCACCATACTTGCAACTTTAATTCTAGGCTGATATATCCTATCTAACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          GTATATATTGTTCTTGAAATGAAGAGGCATAGCTTCTTTAATAATGTCAAGAAGATTATT
JMSF038P24-           GTATATATTGTTCTTGAAATGAAGAGGCATAGCTTCTTTAATAATGTCAAGAAGATTATT
                      ____________________________________________________________
consensus             GTATATATTGTTCTTGAAATGAAGAGGCATAGCTTCTTTAATAATGTCAAGAAGATTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046A09+          TGTATTTTGTACCTGCATCACA                                      
JMSF038P24-           TGTATTTTGTACCTGCATCACACTATATATAACCGAGTTTTCGAGATTATTTTATGATCA
                      ____________________________________________________________
consensus             TGTATTTTGTACCTGCATCACACTATATATAACCGAGTTTTCGAGATTATTTTATGATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038P24-           CATTTCTTGGGTTGTATACAAATAAATAAATAAAGAAGAGTTACTAAACAATAATTATAA
                      ____________________________________________________________
consensus             CATTTCTTGGGTTGTATACAAATAAATAAATAAAGAAGAGTTACTAAACAATAATTATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038P24-           TAGTTGGTTAACATAGTATTATTGGTATAACGGGTTACAAGAAAGTGAGCAACCCATGCC
                      ____________________________________________________________
consensus             TAGTTGGTTAACATAGTATTATTGGTATAACGGGTTACAAGAAAGTGAGCAACCCATGCC