Contig 012110:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS157A04+                                                                  CAAAA
                      ____________________________________________________________
consensus                                                                    CAAAA
 
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JMFS157A04+           TGTTCCCAATACCACCAATACTGTTGCCAAAGCTGCTGCCACCACCCCTGTGGCTGGTGT
                      ____________________________________________________________
consensus             TGTTCCCAATACCACCAATACTGTTGCCAAAGCTGCTGCCACCACCCCTGTGGCTGGTGT
 
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JMFS157A04+           AGATCCCATATATACCACCAGTACTGCCATTAGTGCTACTGCCGCTGCTACAGCAGTTAC
JMSF038M21+                         CCACCAGTACTGCCATTAGTGCTACTGCCGCTGCTACAGCAGTTAC
                      ____________________________________________________________
consensus             AGATCCCATATATACCACCAGTACTGCCATTAGTGCTACTGCCGCTGCTACAGCAGTTAC
 
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JMFS157A04+           TTTGGTGGAAACATATGAGTAGCCAGGGCCTGACCCTACAGAATGATAGTCAATAGAATC
JMSF038M21+           TTTGGTGGAAACATATGAGTAGCCAGGGCCTGACCCTACAGAATGATAGTCAATAGAATC
                      ____________________________________________________________
consensus             TTTGGTGGAAACATATGAGTAGCCAGGGCCTGACCCTACAGAATGATAGTCAATAGAATC
 
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JMFS157A04+           GGCTACTGATTGTTTCACAGATTGAGGTACAGAAATAGCTTCTTCAAACTTAAGCTTCAT
JMSF038M21+           GGCTACTGATTGTTTCACAGATTGAGGTACAGAAATAGCTTCTTCAAACTTAAGCTTCAT
                      ____________________________________________________________
consensus             GGCTACTGATTGTTTCACAGATTGAGGTACAGAAATAGCTTCTTCAAACTTAAGCTTCAT
 
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JMFS157A04+           CACAGCCTTCTCACATTCCTTCAATTTCTTCGTAGCATCAGGATCCTTTGGACATAATCT
JMSF038M21+           CACAGCCTTCTCACATTCCTTCAATTTCTTCGTAGCATCAGGATCATTTGGACATAATCT
                      ____________________________________________________________
consensus             CACAGCCTTCTCACATTCCTTCAATTTCTTCGTAGCATCAGGATCCTTTGGACATAATCT
 
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JMFS157A04+           CTTGACCTGCTGAAAATCTTTGAGTGCATCTTTAAACTTCCCCATCGCCAAATATGCAGC
JMSF038M21+           CTTGACCTGCTGAAAATCTTTGAGTGCATCTTTAAACTTCCCCATCGCCAAATATGCAGC
                      ____________________________________________________________
consensus             CTTGACCTGCTGAAAATCTTTGAGTGCATCTTTAAACTTCCCCATCGCCAAATATGCAGC
 
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JMFS157A04+           ACCTCGTCTATAGTACCCCTTTGAATATTTAGGGTCAACCTCAATAGCTTTGGTAGCATC
JMSF038M21+           ACCTCGTCTATAGTACCCC-TTGAATATTTAGGGTCAACCTCAATAGCTTTGGTAGCATC
                      ____________________________________________________________
consensus             ACCTCGTCTATAGTACCCCTTTGAATATTTAGGGTCAACCTCAATAGCTTTGGTAGCATC
 
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JMFS157A04+           CTGTATAGCACTACCGTACTCCTCCAGTTTAGTGTGCGCGAAGGCACGGTTAGCCCAGTA
JMSF038M21+           CTGTATAGCACTACCGTACTCCTCCAGTTTAGTGTGCGCGAAGGCACGGTTAGCCCAGTA
                      ____________________________________________________________
consensus             CTGTATAGCACTACCGTACTCCTCCAGTTTAGTGTGCGCGAAGGCACGGTTAGCCCAGTA
 
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JMFS157A04+           AACCGCATTCTTACTGTTCAACTCAATTGCTTGTGTGTACAAATCAATAGCTTGCCCAAA
JMSF038M21+           AACCGCATTCTTACTGTTCAACTCAATTGCTTGTGTGTACAAATCAATAGCTTGCCCAAA
                      ____________________________________________________________
consensus             AACCGCATTCTTACTGTTCAACTCAATTGCTTGTGTGTACAAATCAATAGCTTGCCCAAA
 
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JMFS157A04+           TTTATGCGCTTTGAAGGCTTCATTGGCTCGGAGTTTGAGCTGTTCAGC            
JMSF038M21+           TTTATGCGCTTTGAAGGCTTCATTGGCTCGGAGTTTGAGCTGTTCAGCTTGAGAGTCGTT
                      ____________________________________________________________
consensus             TTTATGCGCTTTGAAGGCTTCATTGGCTCGGAGTTTGAGCTGTTCAGCTTGAGAGTCGTT
 
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JMSF038M21+           GGAATGTTCAGGCTCCATTGTGGACAAAATATTGACGATTCTTTTTATGACACGGACTTG
                      ____________________________________________________________
consensus             GGAATGTTCAGGCTCCATTGTGGACAAAATATTGACGATTCTTTTTATGACACGGACTTG
 
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JMSF038M21+           CAATCAGAAGATTTCAGAGTTCATGAATCTCGGTTGTGGTCGTTGCTTTCGGTCGTCGTC
                      ____________________________________________________________
consensus             CAATCAGAAGATTTCAGAGTTCATGAATCTCGGTTGTGGTCGTTGCTTTCGGTCGTCGTC
 
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JMSF038M21+           GTCAATGGAGGAGAGAGAAACCGAAAGCTAGGGAGGGAATATAACCCTAGATGGCTCCCA
                      ____________________________________________________________
consensus             GTCAATGGAGGAGAGAGAAACCGAAAGCTAGGGAGGGAATATAACCCTAGATGGCTCCCA