Contig 012024:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005L20Sequence703012024 (2)ref|XP_010318556.1|108PREDICTED: uncharacterized protein LOC104646544 [Solanum lycopersicum]
JMSF025E01Sequence650012024 (2)523021468

Alignment

This contig is upended


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rJMFF005L20-                                                 TATATATGATTGTATCAGATA
                      ____________________________________________________________
consensus                                                    TATATATGATTGTATCAGATA
 
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rJMFF005L20-          CAAAAACAAACCAGCATACTACACATCCAACCATCCAGCAAGCTAAGGAAACATATAAGA
                      ____________________________________________________________
consensus             CAAAAACAAACCAGCATACTACACATCCAACCATCCAGCAAGCTAAGGAAACATATAAGA
 
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rJMFF005L20-          CATTTTTATGGCATTTAAAAATCATCATTAAAAGTCAAATCTAAGAAGTTGAAGTTTCAC
                      ____________________________________________________________
consensus             CATTTTTATGGCATTTAAAAATCATCATTAAAAGTCAAATCTAAGAAGTTGAAGTTTCAC
 
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rJMFF005L20-          TACTAAATCAACCAAAGAGACTGACAACACCATATTCATATCAAAGAAGGTCACTGACCA
                      ____________________________________________________________
consensus             TACTAAATCAACCAAAGAGACTGACAACACCATATTCATATCAAAGAAGGTCACTGACCA
 
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rJMFF005L20-          AAGGATGGTGGTAGAAACGTTGCACTTTGGACTTCAAATTTGAATACCTTTCATTCATTT
                      ____________________________________________________________
consensus             AAGGATGGTGGTAGAAACGTTGCACTTTGGACTTCAAATTTGAATACCTTTCATTCATTT
 
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rJMFF005L20-          TGTCCATCTCAACCCCAATTGCAACCTCATCTTCAAGTTTCTTGAGTTTCTTCTGTAGCT
                      ____________________________________________________________
consensus             TGTCCATCTCAACCCCAATTGCAACCTCATCTTCAAGTTTCTTGAGTTTCTTCTGTAGCT
 
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rJMFF005L20-          TTTCCAACTCTTGTTTGGTGTCCGCCACTGCTTTCTTCTTCCCTTCCATCTCTTCAAGAG
                      ____________________________________________________________
consensus             TTTCCAACTCTTGTTTGGTGTCCGCCACTGCTTTCTTCTTCCCTTCCATCTCTTCAAGAG
 
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rJMFF005L20-          CCTTCGTCCTCGTTGCCTTCAACCTCCCAGCTTCCATCATGGACTTCTTAGCTTCGTAAA
                      ____________________________________________________________
consensus             CCTTCGTCCTCGTTGCCTTCAACCTCCCAGCTTCCATCATGGACTTCTTAGCTTCGTAAA
 
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rJMFF005L20-          TCTGTTCCACCCTGCAACGAAGCCACCCAATCTCCACCCTTGCGAGCTCAAGATCACTGA
                      ____________________________________________________________
consensus             TCTGTTCCACCCTGCAACGAAGCCACCCAATCTCCACCCTTGCGAGCTCAAGATCACTGA
 
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rJMFF005L20-          CTAGATTGAGCATGGATTTGAGCTCCCCAGCCGCGATACTCAGTATGTCCATGCTGTCCA
                      ____________________________________________________________
consensus             CTAGATTGAGCATGGATTTGAGCTCCCCAGCCGCGATACTCAGTATGTCCATGCTGTCCA
 
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rJMFF005L20-          ATCTCTGGTATACGCTGCACACGCTCTCCAGGAAAGAAGAACGGTATTCAACAGATTGGA
                      ____________________________________________________________
consensus             ATCTCTGGTATACGCTGCACACGCTCTCCAGGAAAGAAGAACGGTATTCAACAGATTGGA
 
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rJMFF005L20-          GGACACTTTCCTTCACAATATCCCCATACCTGGCAAAGATTTTCTTGATAAGAGGTGCGT
JMSF025E01+                     CTTCACAATATCCCCATACCTCGCAAAGATTTTCTTGATAAGAGGTGCGT
                      ____________________________________________________________
consensus             GGACACTTTCCTTCACAATATCCCCATACCTGGCAAAGATTTTCTTGATAAGAGGTGCGT
 
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rJMFF005L20-          TTTCTGGCTTCACCATGTACCC                                      
JMSF025E01+           TTTCTGGCTTCACCATGTACCCCCATCAACCTTTACCAGAAAATTATCCGGTGCTGAGCT
                      ____________________________________________________________
consensus             TTTCTGGCTTCACCATGTACCCCCATCAACCTTTACCAGAAAATTATCCGGTGCTGAGCT
 
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JMSF025E01+           AACTTCCTCGTCATCATTAGAGTCTACAAGCTCTAGGATCTGTGTGAGGTTAAGGTATCA
                      ____________________________________________________________
consensus             AACTTCCTCGTCATCATTAGAGTCTACAAGCTCTAGGATCTGTGTGAGGTTAAGGTATCA
 
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JMSF025E01+           GATCGCGTTGAATGATCAGCAGCACTCTTACAAATTTCGTAGTTTTCTGGTCGTCTATTG
                      ____________________________________________________________
consensus             GATCGCGTTGAATGATCAGCAGCACTCTTACAAATTTCGTAGTTTTCTGGTCGTCTATTG
 
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JMSF025E01+           GCAGTACTACTTGTTGCATTATGGACTACTTGTGTTTCATCATCATCATCATCAAAATGC
                      ____________________________________________________________
consensus             GCAGTACTACTTGTTGCATTATGGACTACTTGTGTTTCATCATCATCATCATCAAAATGC
 
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JMSF025E01+           AAAGGGAGATTGTGTGGAGCAGCAGCATTATTCATCGGAGGCGGCGGCGGCGATGATAAT
                      ____________________________________________________________
consensus             AAAGGGAGATTGTGTGGAGCAGCAGCATTATTCATCGGAGGCGGCGGCGGCGATGATAAT
 
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JMSF025E01+           GAAGGTTGTTCGGCTAAAATATCCTCTTTCTTCACCTTTCTTCACCAAATACTCCATTAT
                      ____________________________________________________________
consensus             GAAGGTTGTTCGGCTAAAATATCCTCTTTCTTCACCTTTCTTCACCAAATACTCCATTAT
 
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JMSF025E01+           TCCTTCTCCACCTTCGACTCCACTCTGCACCTCGAGTTCTTCTTGACCTAGGTCTCTTCG
                      ____________________________________________________________
consensus             TCCTTCTCCACCTTCGACTCCACTCTGCACCTCGAGTTCTTCTTGACCTAGGTCTCTTCG
 
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JMSF025E01+           ACATTTTGCTTCCGCTTCCAAATCTCTCTCTCTTTCTTTCAAGTTTGAGGCAAATGATAA
                      ____________________________________________________________
consensus             ACATTTTGCTTCCGCTTCCAAATCTCTCTCTCTTTCTTTCAAGTTTGAGGCAAATGATAA
 
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JMSF025E01+           ACGCAGAGAAAGGAAGAGATATGGGTTTCAAATTTCTCCCTGCTCTCATTCAAATGATAG
                      ____________________________________________________________
consensus             ACGCAGAGAAAGGAAGAGATATGGGTTTCAAATTTCTCCCTGCTCTCATTCAAATGATAG
 
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JMSF025E01+           ACGCTGAGAGAGAAGGGAAAGGAGAAAGGGGAAAGGGGAAAGGGGTTTCACTAAGCTTCC
                      ____________________________________________________________
consensus             ACGCTGAGAGAGAAGGGAAAGGAGAAAGGGGAAAGGGGAAAGGGGTTTCACTAAGCTTCC