Contig 012014:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017D12Sequence509012014 (2)ref|XP_011086814.1|2e-57PREDICTED: F-box only protein 6 [Sesamum indicum]832002563 (2)ref|XP_006352179.1|1e-129PREDICTED: F-box only protein 6-like [Solanum tuberosum]
JMSF023M11Sequence108012014 (2)751002563 (2)ref|XP_006352179.1|1e-125PREDICTED: F-box only protein 6-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF017D12+                                                  GCTCGGAGAAGCTTTGAGAAG
                      ____________________________________________________________
consensus                                                    GCTCGGAGAAGCTTTGAGAAG
 
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JMFF017D12+           TAAGCATCGAATTCCACTTTTTGCAAACTGATCTGAAGCGGAAAAATGTGGCTATAGGAA
                      ____________________________________________________________
consensus             TAAGCATCGAATTCCACTTTTTGCAAACTGATCTGAAGCGGAAAAATGTGGCTATAGGAA
 
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JMFF017D12+           GTCTTGCTATGACAGCTTCGAAAAGGTCTTCTGGAAATTCTTTCCAAATCTCATGTTCCA
                      ____________________________________________________________
consensus             GTCTTGCTATGACAGCTTCGAAAAGGTCTTCTGGAAATTCTTTCCAAATCTCATGTTCCA
 
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JMFF017D12+           TAACCTCAGTAGAGCAGGTAGTTCCATCTGATCTTCCCCGATTTCGTTCCTTTCGCACTT
                      ____________________________________________________________
consensus             TAACCTCAGTAGAGCAGGTAGTTCCATCTGATCTTCCCCGATTTCGTTCCTTTCGCACTT
 
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JMFF017D12+           TCTTTTTCGGTGGAGGCTTACCAGGTTCCAACATTTTGAGATTTTCAGATTTTCCAGCCG
                      ____________________________________________________________
consensus             TCTTTTTCGGTGGAGGCTTACCAGGTTCCAACATTTTGAGATTTTCAGATTTTCCAGCCG
 
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JMFF017D12+           TCACAAGGAGATTGTAGCAACTGTCCTCAACAGAACTATCATCAAGATTCAGAAAACACC
                      ____________________________________________________________
consensus             TCACAAGGAGATTGTAGCAACTGTCCTCAACAGAACTATCATCAAGATTCAGAAAACACC
 
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JMFF017D12+           ATCTGGGGTGGTGTGGCGGTGGAGGTTGAAGCTGAAGAAAGTAATTAGCAGGAACAGCGG
                      ____________________________________________________________
consensus             ATCTGGGGTGGTGTGGCGGTGGAGGTTGAAGCTGAAGAAAGTAATTAGCAGGAACAGCGG
 
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JMFF017D12+           TGGAAGGGTAACCGCCGTAAAGCTCCAAAAGCTCCTGAACTTGTCCGATGAGTTGCCTGA
                      ____________________________________________________________
consensus             TGGAAGGGTAACCGCCGTAAAGCTCCAAAAGCTCCTGAACTTGTCCGATGAGTTGCCTGA
 
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JMFF017D12+           GCATGGCAAGACCTTCCATGCCCCCCCACCCACCCACCCACAAGGCGGTGTGTGTGTATG
JMSF023M11+                               CCCCCCCACCCACCCACCCACAAGGCGGTGTGTGTGTATG
                      ____________________________________________________________
consensus             GCATGGCAAGACCTTCCATGCCCCCCCACCCACCCACCCACAAGGCGGTGTGTGTGTATG
 
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JMFF017D12+           TATAGAAT                                                    
JMSF023M11+           TATAGAATATATGAATGGGTTCGTAGCAGAAGCGAGATAAGCCCTCTCCCTCTGGGTCGC
                      ____________________________________________________________
consensus             TATAGAATATATGAATGGGTTCGTAGCAGAAGCGAGATAAGCCCTCTCCCTCTGGGTCGC