| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024I23 | Sequence | 488 | 012008 (6) | ref|XP_009797564.1| | 5e-87 | PREDICTED: rhodanese-like domain-containing protein 9, chloroplastic [Nicotiana | 759 | 012008 (6) | ref|XP_009797564.1| | 6e-110 | PREDICTED: rhodanese-like domain-containing protein 9, chloroplastic [Nicotiana |
| JMSF023C23 | Sequence | 635 | 012008 (6) | ref|XP_009797564.1| | 7e-104 | PREDICTED: rhodanese-like domain-containing protein 9, chloroplastic [Nicotiana | 802 | 012008 (6) | ref|XP_009797564.1| | 2e-121 | PREDICTED: rhodanese-like domain-containing protein 9, chloroplastic [Nicotiana |
| JMSF024J11 | Sequence | 624 | 012008 (6) | ref|XP_009797564.1| | 7e-118 | PREDICTED: rhodanese-like domain-containing protein 9, chloroplastic [Nicotiana | 758 | 012008 (6) | ref|XP_009797564.1| | 4e-121 | PREDICTED: rhodanese-like domain-containing protein 9, chloroplastic [Nicotiana |
This contig is upended
. : . : . : . : . : . :
rJMFF024I23- TTGATTTTTACTTTCCGAATTGAATCTTCATGAGTCATGGGTTCTAG
rJMSF023C23- ATCTTCATGAGTCATGGGTTCTAG
____________________________________________________________
consensus TTGATTTTTACTTTCCGAATTGAATCTTCATGAGTCATGGGTTCTAG
. : . : . : . : . : . :
rJMFF024I23- TCTACATAGCATTGAGCATTATACATAGAACTACACCAAAACTTTGATGGCTATTACAAA
rJMSF024J11- AGCATTGAGCATTATACATAGAACTACACCAAAACTTTGATGGCTATTACAAA
rJMSF023C23- TCTACATAGCATTGAGCATTATACATAGAACTACACCAAAACTTTGATGGCTATTACAAA
____________________________________________________________
consensus TCTACATAGCATTGAGCATTATACATAGAACTACACCAAAACTTTGATGGCTATTACAAA
. : . : . : . : . : . :
rJMFF024I23- CACAAACACTAAACCAAACATTTGCTCTAACAATGATGCTGCTATGCTCTTCAGATATCA
rJMSF024J11- CACAAACACTAAACCAAACATTTGCTCTAACAATGATGCTGCTATGCTCTTCAGATATCA
rJMSF023C23- CACAAACACTAAACCAAACATTTGCTCTAACAATGATGCTGCTATGCTCTTCAGATATCA
____________________________________________________________
consensus CACAAACACTAAACCAAACATTTGCTCTAACAATGATGCTGCTATGCTCTTCAGATATCA
. : . : . : . : . : . :
rJMFF024I23- TCATTTACAAGAAAGATCAATCCAAAAAACCAAACACACTTTGGGGCTAGCTTGCAGGAG
rJMSF024J11- TCATTTACAAGAAAGATCAATCCAAAAAACCAAACACACTTTGGGGCTAGCTTGCAGGAG
rJMSF023C23- TCATTTACAAGAAAGATCAATCCAAAAAACCAAACACACTTTGGGGCTAGCTTGCAGGAG
____________________________________________________________
consensus TCATTTACAAGAAAGATCAATCCAAAAAACCAAACACACTTTGGGGCTAGCTTGCAGGAG
. : . : . : . : . : . :
rJMFF024I23- TCATTTGAAGTATCTTTTCTGCTTGATCAGGGAATAATGTGATCAAAAGAAGTGCACAAA
rJMSF024J11- TCATTTGAAGTATCTTTTCTGCTTGATCAGGGAATAATGTGATCAAAAGAAGTGCACAAA
rJMSF023C23- TCATTTGAAGTATCTTTTCTGCTTGATCAGGGAATAATGTGATCAAAAGAAGTGCACAAA
____________________________________________________________
consensus TCATTTGAAGTATCTTTTCTGCTTGATCAGGGAATAATGTGATCAAAAGAAGTGCACAAA
. : . : . : . : . : . :
rJMFF024I23- TTAGTACAGTTCCTAGCACAGCTGAAACCTTTCCTTGTATAGTAATTAAACCGGCCTTGC
rJMSF024J11- TTAGTACAGTTCCTAGCACAGCTGAAATCTTTCCTTGTATAGTAATTAAACCGGCCTTGC
rJMSF023C23- TTAGTACAGTTCCTAGCACAGCTGAAATCTTTCCTTGTATAGTAATTAAACCGGCCTTGC
JMSF024J11+ CTTGTATAGTAATTAAACCGGCCTTGC
____________________________________________________________
consensus TTAGTACAGTTCCTAGCACAGCTGAAATCTTTCCTTGTATAGTAATTAAACCGGCCTTGC
. : . : . : . : . : . :
rJMFF024I23- CTGCATCTTTTAACTCTTTGGAACCGACAGAATCAAATGTTCCTGGTTTTACAGATTGAA
rJMSF024J11- CTGCATCTTTTAACTCTTTGGAACCGACAGAATCAAATGTTCCTGGTTTTACAGATTGAA
rJMSF023C23- CTGCATCTTTTAACTCTTTGGAACCGACAGAATCAAATGTTCCTGGTTTTACAGATTGAA
JMSF024J11+ CTGCATCTTTTAACTCTTTGGAACCGACAGAATCAAATGTTCCTGGTTTTACAGATTGAA
JMSF023C23+ ACCGACAGAATCAAATGTTCCTGGTTTTACAGATTGAA
____________________________________________________________
consensus CTGCATCTTTTAACTCTTTGGAACCGACAGAATCAAATGTTCCTGGTTTTACAGATTGAA
. : . : . : . : . : . :
rJMFF024I23- GCCCTGACGTTATGCATGCTATGTTCTGGAAACCAGCTTGCTCTAATTTCTGGGCAGCAG
rJMSF024J11- GCCCTGACGTTATGCATGCTATGTTCTGGAAACCAGCTTGCTCTAATTTCTGGGCAGCAG
rJMSF023C23- GCCCTGACGTTATGCATGCTATGTTCTGGAAACCAGCTTGCTCTAATTTCTGGGCAGCAG
JMFF024I23+ TCTGGGCAGCAG
JMSF024J11+ GCCCTGACGTTATGCATGCTATGTTCTGGAAACCAGCTTGCTCTAATTTCTGGGCAGCAG
JMSF023C23+ GCCCTGACGTTATGCATGCTATGTTCTGGAAACCAGCTTGCTCTAATTTCTGGGCAGCAG
____________________________________________________________
consensus GCCCTGACGTTATGCATGCTATGTTCTGGAAACCAGCTTGCTCTAATTTCTGGGCAGCAG
. : . : . : . : . : . :
rJMFF024I23- CTGCAGACCTTAATCCTTCTTGACAAACAAGTAGCAGCTTGCTTTCAGGTGAAAATTGGG
rJMSF024J11- CTGCAGACCTTAATCCTTCTTGACAAACAAGTAGCAGCTTGCTTTCAGGTGAAAATTGGG
rJMSF023C23- CTGCAGACCTTAATCCTTCTTGACAAACAAGTAGCAGCTTGCTTTCAGGTGAAAATTGGG
JMFF024I23+ CTGCAGACCTTAATCCTTCTTGACAAACAAGTAGCAGCTTGCTTTCAGGTGAAAATTGGG
JMSF024J11+ CTGCAGACCTTAATCCTTCTTGACAAACAAGTAGCAGCTTGCTTTCAGGTGAAAATTGGG
JMSF023C23+ CTGCAGACCTTAATCCTTCTTGACAAACAAGTAGCAGCTTGCTTTCAGGTGAAAATTGGG
____________________________________________________________
consensus CTGCAGACCTTAATCCTTCTTGACAAACAAGTAGCAGCTTGCTTTCAGGTGAAAATTGGG
. : . : . : . : . : . :
rJMFF024I23- TTCTAACGGATTGAACGAATTCAGGGTTTGGTTTAGTAAAAGGCAGACCAAAAAATAAAC
rJMSF024J11- TTCTAACGGATTGAACGAATTCAGGGTTTGGTTTAGTAAAAGGCAGACCAAAAAATAAAC
rJMSF023C23- TTCTAACGGATTGAACGAATTCAGGGTTTGGTTTAGTAAAAGGCAGACCAAAAAATAAAC
JMFF024I23+ TTCTAACGGATTGAACGAATTCAGGGTTTGGTTTAGTAAAAGGCAGACCAAAAAATAAAC
JMSF024J11+ TTCTAACGGATTGAACGAATTCAGGGTTTGGTTTAGTAAAAGGCAGACCAAAAAATAAAC
JMSF023C23+ TTCTAACGGATTGAACGAATTCAGGGTTTGGTTTAGTAAAAGGCAGACCAAAAAATAAAC
____________________________________________________________
consensus TTCTAACGGATTGAACGAATTCAGGGTTTGGTTTAGTAAAAGGCAGACCAAAAAATAAAC
. : . : . : . : . : . :
rJMFF024I23- CGGAAAAATTGTTGTGCACAGTTCTCTTCACTATAGTTCCTAAGTCATTATCTTTGTTTT
rJMSF024J11- CGGAAAAATTGTTGTGCACAGTTCTCTTCACTATAGTTCCTAAGTCATTATCTTTGTTTT
rJMSF023C23- CGGAAAAA---TTGTGCACAGTTCTCTTCACTATAGTTCCTAAGTCATTATCTTTGTTTT
JMFF024I23+ CGGAAAAATTGTTGTGCACAGTTCTCTTCACTATAGTTCCTAAGTCATTATCTTTGTTTT
JMSF024J11+ CGGAAAAATTGTTGTGCACAGTTCTCTTCACTATAGTTCCTAAGTCATTATCTTTGTTTT
JMSF023C23+ CGGAAAAA---TTGTGCACAGTTCTCTTCACTATAGTTCCTAAGTCATTATCTTTGTTTT
____________________________________________________________
consensus CGGAAAAATTGTTGTGCACAGTTCTCTTCACTATAGTTCCTAAGTCATTATCTTTGTTTT
. : . : . : . : . : . :
rJMFF024I23- CAATGAAAAGTGGAACATGAAAACATTGTTTTATACGTGCTCGCTCAAACTGAGTTCTGT
rJMSF024J11- CAATGAAAAGTGGAACATGAAAACATTGTTTTATACGTGCTCGCTCAAACTGAGTTCTGT
rJMSF023C23- CAATGAAAAGTGGAACATGAAAACATTGTTTTATACGTGCTCGCTCAAACTGAGTTCTGT
JMFF024I23+ CAATGAAAAGTGGAACATGAAAACATTGTTTTATACGTGCTCGCTCAAACTGAGTTCTGT
JMSF024J11+ CAATGAAAAGTGGAACATGAAAACATTGTTTTATACGTGCTCGCTCAAACTGAGTTCTGT
JMSF023C23+ CAATGAAAAGTGGAACATGAAAACATTGTTTTATACGTGCTCGCTCAAACTGAGTTCTGT
____________________________________________________________
consensus CAATGAAAAGTGGAACATGAAAACATTGTTTTATACGTGCTCGCTCAAACTGAGTTCTGT
. : . : . : . : . : . :
rJMFF024I23- CACGCACATCTACCACTGCATACCCATCAACAGCAACGAGCTTCTTCGCTTC
rJMSF024J11- CACGCACATCTACCACTGCATACCCATCAACAGCAACGAGCTTCTTCGCTTCCTCAGCAT
rJMSF023C23- CACGCACATCTACCACTGCATACCCATCAACAGCAACGAGCTTCTTCGCTTCCTCAGCAT
JMFF024I23+ CACGCACATCTACCACTGCATACCCATCAACAGCAACGAGCTTCTTCGCTTCCTCAGCAT
JMSF024J11+ CACGCACATCTACCACTGCATACCCATCAACAGCAACGAGCTTCTTCGCTTCCTCAGCAT
JMSF023C23+ CACGCACATCTACCACTGCATACCCATCAACAGCAACGAGCTTCTTCGCTTCCTCAGCAT
____________________________________________________________
consensus CACGCACATCTACCACTGCATACCCATCAACAGCAACGAGCTTCTTCGCTTCCTCAGCAT
. : . : . : . : . : . :
rJMSF024J11- TCACAAATTCAACTTCTGCTTTGATCCCCAAAGCTCTTCTACGCA
rJMSF023C23- TCACAAATTCAACTTCTGCTTTGATCCCCAAAGCTCTTCTACGCAGNGGTTTCCCTTTAA
JMFF024I23+ TCACAAATTCAACTTCTGCTTTGATCCCCAAAGCTCTTCTACGCAGTGGTTTCCCTTTAA
JMSF024J11+ TCACAAATTCAACTTCTGCTTTGATCCCCAAAGCTCTTCTACGCAGTGGTTTCCCTTTAA
JMSF023C23+ TCACAAATTCAACTTCTGCTTTGATCCCCAAAGCTCTTCTACGCAGTGGTTTCCCTTTAA
____________________________________________________________
consensus TCACAAATTCAACTTCTGCTTTGATCCCCAAAGCTCTTCTACGCAGTGGTTTCCCTTTAA
. : . : . : . : . : . :
rJMSF023C23- C
JMFF024I23+ CAATCCCCCCTCGATAAGTCTTGAGTACCAACTGAGATGTCCCCAGATTGCTTGGAGAAG
JMSF024J11+ CAATCCCCCCTCGATAAGTCTTGAGTACCAACTGAGATGTCCCCAGATTGCTTGGAGAAG
JMSF023C23+ CAATCCCCCCTCGATAAGTCTTGAGTACCAACTGAGATGTCCCCAGATTGCTTGGAGAAG
____________________________________________________________
consensus CAATCCCCCCTCGATAAGTCTTGAGTACCAACTGAGATGTCCCCAGATTGCTTGGAGAAG
. : . : . : . : . : . :
JMFF024I23+ AGAGAATTGCAGGAGAGCAGCAACCAAACCCTGCCATCCCTGTAAAGCTTTAATTT
JMSF024J11+ AGAGAATTGCAGGAGAGCAGCAACCAAACCCTGCCATCCCTGTAAAGCTTTAATTT
JMSF023C23+ AGAGAATTGCAGGAGAGCAGCAACCAAACCCTGCCATCCCTGTAAAGCTTTAATTTAAAT
____________________________________________________________
consensus AGAGAATTGCAGGAGAGCAGCAACCAAACCCTGCCATCCCTGTAAAGCTTTAATTTAAAT
. : . : . : . : . : . :
JMSF023C23+ TCTTCTTTTCTCTCTTGGCAACTTGACGAAACGAGAAAGATCGGAACTGATAGCTTCTCC
____________________________________________________________
consensus TCTTCTTTTCTCTCTTGGCAACTTGACGAAACGAGAAAGATCGGAACTGATAGCTTCTCC