Contig 012005:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN028I13Sequence501012005 (3)ref|XP_006342033.1|5e-31PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [
JMSF022L21Sequence607012005 (3)ref|XP_002276775.1|2e-77PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LO726012005 (3)ref|XP_006342033.1|2e-103PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN028I13+ GACAAACAAACTATTGCTGATTACTGAGGTTTGGGTAGCACTACTTGACAA
rJMSF022L21- AACTATTGCTGATTACTGAGGTTTGGGTAGCACTACTTGACAA
                      ____________________________________________________________
consensus GACAAACAAACTATTGCTGATTACTGAGGTTTGGGTAGCACTACTTGACAA
 
. : . : . : . : . : . :
JMFN028I13+ AGTGAATCAAACAGTTACAAATTGACTGATAAATTACTTGTTCACCCAATGGTAAAAACC
rJMSF022L21- AGTGAATCAAACAGTTACAAATTGACTGATAAATTACTTGTTCACCCAATGGTAAAAACC
                      ____________________________________________________________
consensus AGTGAATCAAACAGTTACAAATTGACTGATAAATTACTTGTTCACCCAATGGTAAAAACC
 
. : . : . : . : . : . :
JMFN028I13+ G-AAAAAAACAAAAAAAATCCACAGGAAGCTAAAAGAACTGTGGAACTAAAACTACATTG
rJMSF022L21- GAAAAAAAACAAAAAAAATCCACAGGAAGCTAAAAGAACTGTGGAACTAAAACTACATTG
                      ____________________________________________________________
consensus GAAAAAAAACAAAAAAAATCCACAGGAAGCTAAAAGAACTGTGGAACTAAAACTACATTG
 
. : . : . : . : . : . :
JMFN028I13+ AACTTTGCCTGTGTGTGATAGAAATTATCTGCCTTTCAAGAATTGTGGAAAATGTGTTTT
rJMSF022L21- AACTTTGCCTGTGTGTGATAGAAATTATCTGCCTTTCAAGAATTGTGGAAAATGTGTTTT
                      ____________________________________________________________
consensus AACTTTGCCTGTGTGTGATAGAAATTATCTGCCTTTCAAGAATTGTGGAAAATGTGTTTT
 
. : . : . : . : . : . :
JMFN028I13+ CCCTGTACAAAGATTCTCAGATCTCAACGGGCGATTTCTGACTTGGTCGTCGTGTAGCCC
rJMSF022L21- CCCTGTACAAAGATTCTCAGATCTCAACGGGCGATTTCTGACTTGGTCGTCGTGTAGCCC
                      ____________________________________________________________
consensus CCCTGTACAAAGATTCTCAGATCTCAACGGGCGATTTCTGACTTGGTCGTCGTGTAGCCC
 
. : . : . : . : . : . :
JMFN028I13+ AGCTGTTGCTCCATCTCCCAGCTTAACTTTGGGGCAACCCCATTGTGTTTTGGGACATAG
rJMSF022L21- AGCTGTTGCTCCATCTCCCAGCTTAACTTTTGGGCAACCCCATTGTGTTTTGGGACATAG
                      ____________________________________________________________
consensus AGCTGTTGCTCCATCTCCCAGCTTAACTTTTGGGCAACCCCATTGTGTTTTGGGACATAG
 
. : . : . : . : . : . :
JMFN028I13+ TCCTCAAGCCTGGACATGAGTTCTTGGGCAGTCGGGGCAGATACGACGATGTGGCGGGCA
rJMSF022L21- TCCTCAAGCCTGGACATGAGTTCTTGGGCAGTCGGGGCAGATACGACGATGTGGCGGGCA
                      ____________________________________________________________
consensus TCCTCAAGCCTGGACATGAGTTCTTGGGCAGTCGGGGCAGATACGACGATGTGGCGGGCA
 
. : . : . : . : . : . :
JMFN028I13+ GATGGGGTGATGAATCCTTCATTGACAGCTATTGTCTATGAAACACAGAAGGGAGTTGTA
rJMSF022L21- GATGGGGTGATGAATCCTTCATTGACAGCT-TTGTCTATGAAACACAGAAGGGAGTTGTA
                      ____________________________________________________________
consensus GATGGGGTGATGAATCCTTCATTGACAGCTATTGTCTATGAAACACAGAAGGGAGTTGTA
 
. : . : . : . : . : . :
JMFN028I13+ GTACCCATCTACATTCAGCAGACCAACC
rJMSF022L21- GTACCCATCTACATTCAGCAGACCAACCGGTTTGTCATGAATGCCTAACTGAGCCCAAGT
JMSF022L21+ CCCAAGT
                      ____________________________________________________________
consensus GTACCCATCTACATTCAGCAGACCAACCGGTTTGTCATGAATGCCTAACTGAGCCCAAGT
 
. : . : . : . : . : . :
rJMSF022L21- TATGACCTCCAGGAGCTCCTCTAAAGTTCCATACCCACCTGGCAAAGCTATGAAAGCATC
JMSF022L21+ TATGACCTCCAGGAGCTCCTCTAAAGTTCCATACCCACCTGGCAAAGCTATGAAAGCATC
                      ____________________________________________________________
consensus TATGACCTCCAGGAGCTCCTCTAAAGTTCCATACCCACCTGGCAAAGCTATGAAAGCATC
 
. : . : . : . : . : . :
rJMSF022L21- AGATTGTTTGGCCATTTCTGCCTTCCTTTGGTGCATACCAGACACAGCTCTCACTTCCCC
JMSF022L21+ AGATTGTTTGGCCATTTCTGCCTTCCTTTGGTGCATACCAGACACAGCTCTCACTTCCCC
                      ____________________________________________________________
consensus AGATTGTTTGGCCATTTCTGCCTTCCTTTGGTGCATACCAGACACAGCTCTCACTTCCCC
 
. : . : . : . : . : . :
rJMSF022L21- CACTGTCTCTCCAGTGATCTCTCTTGGCATCAGAGTTTTAGGAATCACCCCTAAAACATG
JMSF022L21+ CACTGTCTCTCCAGTGATCTCTCTTGGCATCAGAGTTTTAGGAATCACCCCTAAAACATG
                      ____________________________________________________________
consensus CACTGTCTCTCCAGTGATCTCTCTTGGCATCAGAGTTTTAGGAATCACCCCTAAAACATG
 
. : . : . : . : . : . :
rJMSF022L21- TCTTCCACCATTATAAACAGCTTG
JMSF022L21+ TCTTCCACCATTATAAACAGCTTGGGAAACTAGACCCATCAAGCCTATGCTCCCACCTCC
                      ____________________________________________________________
consensus TCTTCCACCATTATAAACAGCTTGGGAAACTAGACCCATCAAGCCTATGCTCCCACCTCC
 
. : . : . : . : . : . :
JMSF022L21+ ATAAACCAAGTCTATGTTCCTTTCAACCAGTTGGTTTGCTAGCTGGATAGCTGCAAGCTG
                      ____________________________________________________________
consensus ATAAACCAAGTCTATGTTCCTTTCAACCAGTTGGTTTGCTAGCTGGATAGCTGCAAGCTG
 
. : . : . : . : . : . :
JMSF022L21+ GTAACTAGGGTTCTTGCCAGGGCTGCTGCCACAGAAAACACAGACCCTCTTGAATCTTGA
                      ____________________________________________________________
consensus GTAACTAGGGTTCTTGCCAGGGCTGCTGCCACAGAAAACACAGACCCTCTTGAATCTTGA
 
. : . : . : . : . : . :
JMSF022L21+ TGGCCTTGTGGGCTGATGAGAAGGAGGAGATGGGGATTGGAACTGGTGGGTGTTTTCCAT
                      ____________________________________________________________
consensus TGGCCTTGTGGGCTGATGAGAAGGAGGAGATGGGGATTGGAACTGGTGGGTGTTTTCCAT
 
. : . : . : . : . : . :
JMSF022L21+ AGTTGTGAAAAAAGCAATTTTGTGTAGTACCCTTTTGTTCTTGGTGCTTTCTGGTAGTAA
                      ____________________________________________________________
consensus AGTTGTGAAAAAAGCAATTTTGTGTAGTACCCTTTTGTTCTTGGTGCTTTCTGGTAGTAA
 
. : . : . : . : . : . :
JMSF022L21+ TCCAAGGAGAGAAAGAGAGAGATAGAGGGAGAGAGAGATGGATTGGTAATAGGTGTGGAT
                      ____________________________________________________________
consensus TCCAAGGAGAGAAAGAGAGAGATAGAGGGAGAGAGAGATGGATTGGTAATAGGTGTGGAT
 
. : . : . : . : . : . :
JMSF022L21+ GAGTTTAGAGGTGGGTCAGCAAGTTTTCTGCACTTCTCTGAAATTTGTATGGCAAGAAGC
                      ____________________________________________________________
consensus GAGTTTAGAGGTGGGTCAGCAAGTTTTCTGCACTTCTCTGAAATTTGTATGGCAAGAAGC