Contig 012004:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020K21Sequence677012004 (2)ref|XP_009802254.1|7e-67PREDICTED: toll/interleukin-1 receptor-like protein, partial [Nicotiana sylvest723021447
JMSF022H16Sequence651012004 (2)ref|XP_002325743.2|9e-32hypothetical protein POPTR_0019s00880g, partial [Populus trichocarpa] gb|EEF0012

Alignment

This contig is upended


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JMSF020K21+                                GACGGATTGTATCATATAAGGGGAATAATGGAAGAAGAC
                      ____________________________________________________________
consensus                                  GACGGATTGTATCATATAAGGGGAATAATGGAAGAAGAC
 
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JMSF020K21+           AACCAGAAAATGCTACCAAAAAGTTTTAATATTTTTTTTAAAAATAAAAGGGAGAAATCA
                      ____________________________________________________________
consensus             AACCAGAAAATGCTACCAAAAAGTTTTAATATTTTTTTTAAAAATAAAAGGGAGAAATCA
 
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JMSF020K21+           AGATACCCATCAGCATCGTTCAGTAAATCCCAACCAGAAAAATTTGCAACCTTGGTCAGA
                      ____________________________________________________________
consensus             AGATACCCATCAGCATCGTTCAGTAAATCCCAACCAGAAAAATTTGCAACCTTGGTCAGA
 
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JMSF020K21+           GCTGTTTTCCATTGACTAACTTTTTTGGTCCCAAATCGTTGTTGATGTTGAGCCAAGGCT
                      ____________________________________________________________
consensus             GCTGTTTTCCATTGACTAACTTTTTTGGTCCCAAATCGTTGTTGATGTTGAGCCAAGGCT
 
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JMSF020K21+           TCACCAAACTCACCGGTTTGTTTGCGCACTTGAGAAGGATCAACATCATAGAATACAGGG
                      ____________________________________________________________
consensus             TCACCAAACTCACCGGTTTGTTTGCGCACTTGAGAAGGATCAACATCATAGAATACAGGG
 
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JMSF020K21+           AGAACCACCTGATTTGCCTTTTCTTTACATTCCACTATCTTCACAAGCTCCTCAAGACAC
JMSF022H16+                    TGATTTGCCTTTTCTTTACATTCCACTATCTTCACAAGCTCGTCAAGACAC
                      ____________________________________________________________
consensus             AGAACCACCTGATTTGCCTTTTCTTTACATTCCACTATCTTCACAAGCTCGTCAAGACAC
 
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JMSF020K21+           CACCGGGAAGAGGCATGGGTTTTGGAGAACACAATAATGGAGATCTTTGATTCTTGAATA
JMSF022H16+           CACCGGGAAGAGGCATAGGTTTTGGAGAACACAATAATAGAAATCTTTGATTGTTGAATA
                      ____________________________________________________________
consensus             CACCGGGAAGAGGCATGGGTTTTGGAGAACACAATAATGGAGATCTTTGATTGTTGAATA
 
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JMSF020K21+           GCTTTGATGAGGTCAGTGGAGATGTCCTCTCCTTTACGGAGCTCTTCTGCATCTCTGAAA
JMSF022H16+           GCTTTGATGAGGTCAGTGGAGATGTCTTCTCCTTTACGGAGCTCTTCTGCATCTCTGAAA
                      ____________________________________________________________
consensus             GCTTTGATGAGGTCAGTGGAGATGTCTTCTCCTTTACGGAGCTCTTCTGCATCTCTGAAA
 
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JMSF020K21+           GTGTGAACTCCAACTCGGCACAACGCAGCAAAGAGGTGATCTGTAAAGGATTTTCGTGTG
JMSF022H16+           GTGTGAACTCCTGCTCGGCACAACGCAGCAAAGAGGTGATCTGTAAAAGACTTTCGTGTG
                      ____________________________________________________________
consensus             GTGTGAACTCCTGCTCGGCACAACGCAGCAAAGAGGTGATCTGTAAAGGATTTTCGTGTG
 
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JMSF020K21+           TCTTCACCTCTAAAGCTCAAAAAGACATC                               
JMSF022H16+           TCTTCACCTCTAAAGCTCAAAAAGACATCATAGTCCCAACAGCACGGAAGTGAAGAGGAG
                      ____________________________________________________________
consensus             TCTTCACCTCTAAAGCTCAAAAAGACATCATAGTCCCAACAGCACGGAAGTGAAGAGGAG
 
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JMSF022H16+           GATGAGGGAAGGAGCAGTAGTTGATTAGTTTCAGAAGTGGATTCCATGATATGAATATAT
                      ____________________________________________________________
consensus             GATGAGGGAAGGAGCAGTAGTTGATTAGTTTCAGAAGTGGATTCCATGATATGAATATAT
 
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JMSF022H16+           GATGGTGGTGGAAACACAGCTAAGGAAGGTAGGAAGGAAGGATGGATGGAGATTAAAGCT
                      ____________________________________________________________
consensus             GATGGTGGTGGAAACACAGCTAAGGAAGGTAGGAAGGAAGGATGGATGGAGATTAAAGCT
 
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JMSF022H16+           TAACTTACGATTACTACTGCGTTTAATTGGCTGCTTCTAATTCATGTGGAGGCATTTATA
                      ____________________________________________________________
consensus             TAACTTACGATTACTACTGCGTTTAATTGGCTGCTTCTAATTCATGTGGAGGCATTTATA
 
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JMSF022H16+           TTATATATACATCTTCTGATCTCTAAGAAATGGAAATTGCTATGAATTTTCTTGCATCCA
                      ____________________________________________________________
consensus             TTATATATACATCTTCTGATCTCTAAGAAATGGAAATTGCTATGAATTTTCTTGCATCCA
 
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JMSF022H16+           CTTCCATTTTTAATAAAGATGTAGGCCGGGCAGAGCATTAAATAAAACAATAATAGAGTT
                      ____________________________________________________________
consensus             CTTCCATTTTTAATAAAGATGTAGGCCGGGCAGAGCATTAAATAAAACAATAATAGAGTT
 
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JMSF022H16+           TTGTGGGTGTTTGATCGAGTGGCACCTTTTGGTTTGACAAAACGAATTGAAGCAATTGTC
                      ____________________________________________________________
consensus             TTGTGGGTGTTTGATCGAGTGGCACCTTTTGGTTTGACAAAACGAATTGAAGCAATTGTC