Contig 011992:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009N17Sequence541011992 (6)681011437 (4)ref|XP_009620200.1|2e-120PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMFF027J12Sequence537011992 (6)661011437 (4)ref|XP_009620200.1|1e-118PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMFF036K07Sequence598011992 (6)521011437 (4)ref|XP_009620200.1|7e-94PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMSF020L15Sequence674011992 (6)783017135ref|XP_009620200.1|2e-68PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMSF051B11Sequence630011992 (6)783024698ref|XP_009620200.1|5e-146PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMSF051D02Sequence628011992 (6)734011437 (4)ref|XP_009620200.1|9e-138PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF051B11+ CCCTGGGGCAGCCCAA
JMSF051D02+ CTGGGGCAGCCCAA
JMSF020L15+ CTGGGGCAGCCCAA
                      ____________________________________________________________
consensus CCCTGGGGCAGCCCAA
 
. : . : . : . : . : . :
JMSF051B11+ ATGGGCAATATTGTTTGAAACTCGGATCACCGAGTCATCATTAAGAGAAGTGTCACATCT
JMSF051D02+ ATGGGCAATATTGTTTGAAACTCGGATCACCGAGTCATCATTAAGAGAAGTGTCACATCT
JMFF036K07+ TCT
JMSF020L15+ ATGGGCAATATTGTTTGAAACTCGGATCACCGAGTCATCATTAAGAGAAGTGTCACATCT
                      ____________________________________________________________
consensus ATGGGCAATATTGTTTGAAACTCGGATCACCGAGTCATCATTAAGAGAAGTGTCACATCT
 
. : . : . : . : . : . :
JMSF051B11+ TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
JMSF051D02+ TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
JMFF036K07+ TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
JMFF027J12+ AT
JMFF009N17+ CCACAT
JMSF020L15+ TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
                      ____________________________________________________________
consensus TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
 
. : . : . : . : . : . :
JMSF051B11+ TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMSF051D02+ TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMFF036K07+ TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMFF027J12+ TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMFF009N17+ TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMSF020L15+ TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
                      ____________________________________________________________
consensus TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
 
. : . : . : . : . : . :
JMSF051B11+ ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMSF051D02+ ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMFF036K07+ ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMFF027J12+ ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMFF009N17+ ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMSF020L15+ ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
                      ____________________________________________________________
consensus ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
 
. : . : . : . : . : . :
JMSF051B11+ TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMSF051D02+ TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMFF036K07+ TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMFF027J12+ TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMFF009N17+ TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMSF020L15+ TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
                      ____________________________________________________________
consensus TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
 
. : . : . : . : . : . :
JMSF051B11+ ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMSF051D02+ ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMFF036K07+ ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMFF027J12+ ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMFF009N17+ ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMSF020L15+ ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
                      ____________________________________________________________
consensus ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
 
. : . : . : . : . : . :
JMSF051B11+ GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMSF051D02+ GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMFF036K07+ GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMFF027J12+ GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMFF009N17+ GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMSF020L15+ GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
                      ____________________________________________________________
consensus GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
 
. : . : . : . : . : . :
JMSF051B11+ CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMSF051D02+ CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMFF036K07+ CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMFF027J12+ CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMFF009N17+ CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMSF020L15+ CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
                      ____________________________________________________________
consensus CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
 
. : . : . : . : . : . :
JMSF051B11+ GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMSF051D02+ GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMFF036K07+ GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMFF027J12+ GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMFF009N17+ GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMSF020L15+ GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
                      ____________________________________________________________
consensus GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
 
. : . : . : . : . : . :
JMSF051B11+ AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMSF051D02+ AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMFF036K07+ AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMFF027J12+ AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMFF009N17+ AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMSF020L15+ AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
                      ____________________________________________________________
consensus AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
 
. : . : . : . : . : . :
JMSF051B11+ GGCTTCAGGCTTC
JMSF051D02+ GGCTTCAGGCTTC
JMFF036K07+ GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATT
JMFF027J12+ GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATT
JMFF009N17+ GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATT
JMSF020L15+ GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATTAATTC
                      ____________________________________________________________
consensus GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATTAATTC