Contig 011988:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036J16Sequence546011988 (4)ref|XP_009594336.1|1e-92PREDICTED: squalene synthase-like [Nicotiana tomentosiformis]723006792 (11)ref|XP_009631700.1|1e-89PREDICTED: squalene synthase [Nicotiana tomentosiformis]
JMFF040O18Sequence549011988 (4)ref|XP_009594336.1|1e-92PREDICTED: squalene synthase-like [Nicotiana tomentosiformis]797006792 (11)ref|XP_009631700.1|3e-110PREDICTED: squalene synthase [Nicotiana tomentosiformis]
JMSF020A01Sequence696011988 (4)gb|AAD20626.1|4e-111squalene synthase [Capsicum annuum]791006792 (11)ref|XP_009631700.1|4e-102PREDICTED: squalene synthase [Nicotiana tomentosiformis]
JMSF036N16Sequence609011988 (4)gb|AAD20626.1|4e-113squalene synthase [Capsicum annuum]595011358 (4)gb|ABV89583.1|2e-91plastid 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Rauvolfia vertici

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF036N16+ TAATCCAACAAGCCCAGCAACATAATGACAATATTCATCATAATCA
JMSF020A01+ AAGCCCAGCAACATAATGACAATATTCATCATAATCA
                      ____________________________________________________________
consensus TAATCCAACAAGCCCAGCAACATAATGACAATATTCATCATAATCA
 
. : . : . : . : . : . :
JMSF036N16+ TCAATTGTTTCGACCTCCTTGCATATAAACTTTGCCAT-CCCTGCACCCATCCTCATGGT
JMFF036J16+ TTGCATATAAACTTTGCCATCCCCTGCACCCATCCTCATGGT
JMFF040O18+ TCCTTGCATATAAACTTTGCCATCCCCTGCACCCATCCTCATGGT
JMSF020A01+ TCAATTGTTTCGACCTCCTTGCATATAAACTTTGCCAT-CCCTGCACCCATCCTCATGGT
                      ____________________________________________________________
consensus TCAATTGTTTCGACCTCCTTGCATATAAACTTTGCCATCCCCTGCACCCATCCTCATGGT
 
. : . : . : . : . : . :
JMSF036N16+ AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
JMFF036J16+ AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
JMFF040O18+ AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
JMSF020A01+ AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
                      ____________________________________________________________
consensus AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
 
. : . : . : . : . : . :
JMSF036N16+ ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
JMFF036J16+ ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
JMFF040O18+ ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
JMSF020A01+ ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
                      ____________________________________________________________
consensus ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
 
. : . : . : . : . : . :
JMSF036N16+ GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
JMFF036J16+ GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
JMFF040O18+ GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
JMSF020A01+ GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
                      ____________________________________________________________
consensus GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
 
. : . : . : . : . : . :
JMSF036N16+ TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
JMFF036J16+ TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
JMFF040O18+ TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
JMSF020A01+ TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
                      ____________________________________________________________
consensus TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
 
. : . : . : . : . : . :
JMSF036N16+ GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
JMFF036J16+ GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
JMFF040O18+ GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
JMSF020A01+ GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
                      ____________________________________________________________
consensus GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
 
. : . : . : . : . : . :
JMSF036N16+ CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGNTTCTCGATCTGCCTCGC
JMFF036J16+ CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGC
JMFF040O18+ CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGC
JMSF020A01+ CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGC
                      ____________________________________________________________
consensus CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGC
 
. : . : . : . : . : . :
JMSF036N16+ CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
JMFF036J16+ CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
JMFF040O18+ CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
JMSF020A01+ CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
                      ____________________________________________________________
consensus CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
 
. : . : . : . : . : . :
JMSF036N16+ ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
JMFF036J16+ ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
JMFF040O18+ ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
JMSF020A01+ ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
                      ____________________________________________________________
consensus ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
 
. : . : . : . : . : . :
JMSF036N16+ CCGATCCAATTTAAAGATCCTTT
JMFF036J16+ CCGATCCAATTTAAAGATCCTTT
JMFF040O18+ CCGATCCAATTTAAAGATCCTTT
JMSF020A01+ CCGATCCAATTTAAAGATCCTTTCGAAGCGTACATTCATACAACAGAGAGAGATATAGAG
                      ____________________________________________________________
consensus CCGATCCAATTTAAAGATCCTTTCGAAGCGTACATTCATACAACAGAGAGAGATATAGAG
 
. : . : . : . : . : . :
JMSF020A01+ AGTTTCGAAATTCTGGATGTACCTGTGTGTGTTCTGTAATGCAAAGCCTGTGAGCTTTTC
                      ____________________________________________________________
consensus AGTTTCGAAATTCTGGATGTACCTGTGTGTGTTCTGTAATGCAAAGCCTGTGAGCTTTTC