Contig 011946:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004G04Sequence611011946 (5)ref|XP_009757253.1|4e-35PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nicotiana sylvestris]
JMSF012O11Sequence431011946 (5)704004607 (11)gb|AFW63178.1|1e-29putative DEAD-box ATP-dependent RNA helicase family protein [Zea mays]
JMSF016P03Sequence457011946 (5)ref|XP_009757253.1|1e-14PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nicotiana sylvestris]725004607 (11)gb|AFW63178.1|2e-32putative DEAD-box ATP-dependent RNA helicase family protein [Zea mays]
JMSF043F14Sequence848011946 (5)ref|XP_009757253.1|3e-107PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nicotiana sylvestris]820004607 (11)ref|NP_001132565.1|2e-58uncharacterized protein LOC100194030 [Zea mays] gb|ACF81456.1| unknown [Zea mays
JMSF050B05Sequence649011946 (5)ref|XP_009757253.1|4e-44PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nicotiana sylvestris]780004607 (11)gb|AFW63178.1|2e-34putative DEAD-box ATP-dependent RNA helicase family protein [Zea mays]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF043F14+ CAAAATGCAGATGCCCTTTTTGGCAAGATCAAGTATTNTTCCAGGAAGTTCCAACA
                      ____________________________________________________________
consensus CAAAATGCAGATGCCCTTTTTGGCAAGATCAAGTATTNTTCCAGGAAGTTCCAACA
 
. : . : . : . : . : . :
JMSF043F14+ AGTAAATGGACTGGTTGATACAACCGCATGATATCATCTTTCAAATTAGTTCCTCCAGTA
                      ____________________________________________________________
consensus AGTAAATGGACTGGTTGATACAACCGCATGATATCATCTTTCAAATTAGTTCCTCCAGTA
 
. : . : . : . : . : . :
JMSF043F14+ GAAACCATTACTTGTATCTTCAAGTGTTTACCAAGTTCCTTACAAACTTGAGACGTCTGA
                      ____________________________________________________________
consensus GAAACCATTACTTGTATCTTCAAGTGTTTACCAAGTTCCTTACAAACTTGAGACGTCTGA
 
. : . : . : . : . : . :
JMSF043F14+ AGTGCTAACTCTCTAGTAGGGACAAGTATAACAACTTGAATGACATTAGTCTCTGTATCA
                      ____________________________________________________________
consensus AGTGCTAACTCTCTAGTAGGGACAAGTATAACAACTTGAATGACATTAGTCTCTGTATCA
 
. : . : . : . : . : . :
JMSF043F14+ ATTTTTTCTAGTGCGGGAATACAAAAGGCAGCTGTTTTCCCAGTTCCATTTTTAGCTCTA
JMSF050B05+ GAATACAAAAGGCAGCTGTTTTCCCAGTTCCATTTTTAGCTCTA
                      ____________________________________________________________
consensus ATTTTTTCTAGTGCGGGAATACAAAAGGCAGCTGTTTTCCCAGTTCCATTTTTAGCTCTA
 
. : . : . : . : . : . :
JMSF043F14+ GCAAGAATATCGCTCCCAGTAAGTGCAATTGGGATACTCTCTTCCTGAATGGGAGAAGGT
JMSF050B05+ GCAAGAATATCGCTCCCAGTAAGTGCAATTGGGATACTCTCTTCCTGAATGGGAGAAGGT
JMFF004G04+ ATGGGAGAAGGT
                      ____________________________________________________________
consensus GCAAGAATATCGCTCCCAGTAAGTGCAATTGGGATACTCTCTTCCTGAATGGGAGAAGGT
 
. : . : . : . : . : . :
JMSF043F14+ CTCTCAAACCCTTTCTCATATATCCCCATAAGTAGCTCACGTTTCAAGAAGTAATCTTCA
JMSF050B05+ CTCTCAAACCCTTTCTCATATATCCCCATAAGTAGCTCACGTTTCAAGAAGTAATCTTCA
JMFF004G04+ CTCTCAAACCCTTTTTCATATATCCCCATAAGTAGCTCACGTTTCAAGAAGTAATCTTCA
                      ____________________________________________________________
consensus CTCTCAAACCCTTTCTCATATATCCCCATAAGTAGCTCACGTTTCAAGAAGTAATCTTCA
 
. : . : . : . : . : . :
JMSF043F14+ AACTCATTTCCTTTTGTTGCAGTCACATCCTCTGTCCTATAACGTGTATCAGGCGCTGGT
JMSF050B05+ AACTCATTTCCTTTTGTTGCAGTCACATC--CTGTCCTATAACGTGTATCAGGCGCTGGT
JMSF016P03+ GCAGTCACATCCTCTGTCCTATAACGTGTATCAGGCGCTGGT
JMFF004G04+ AACTCATTTCCTTTTGTTGCAGTCACATCCTCTGTCCTATAACGTGTATCAGTCGCTGGT
                      ____________________________________________________________
consensus AACTCATTTCCTTTTGTTGCAGTCACATCCTCTGTCCTATAACGTGTATCAGGCGCTGGT
 
. : . : . : . : . : . :
JMSF043F14+ ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
JMSF050B05+ ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
JMSF016P03+ ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
JMFF004G04+ ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
JMSF012O11+ ATTGTATAGTT
                      ____________________________________________________________
consensus ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
 
. : . : . : . : . : . :
JMSF043F14+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
JMSF050B05+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
JMSF016P03+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
JMFF004G04+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
JMSF012O11+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
                      ____________________________________________________________
consensus TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
 
. : . : . : . : . : . :
JMSF043F14+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
JMSF050B05+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
JMSF016P03+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
JMFF004G04+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
JMSF012O11+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
                      ____________________________________________________________
consensus TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
 
. : . : . : . : . : . :
JMSF043F14+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
JMSF050B05+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
JMSF016P03+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
JMFF004G04+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
JMSF012O11+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
                      ____________________________________________________________
consensus TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
 
. : . : . : . : . : . :
JMSF043F14+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
JMSF050B05+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
JMSF016P03+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
JMFF004G04+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
JMSF012O11+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
                      ____________________________________________________________
consensus TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
 
. : . : . : . : . : . :
JMSF043F14+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
JMSF050B05+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
JMSF016P03+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
JMFF004G04+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
JMSF012O11+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
                      ____________________________________________________________
consensus CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
 
. : . : . : . : . : . :
JMSF043F14+ TAACGAAAA
JMSF050B05+ TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATGCGCTCTCTC
JMSF016P03+ TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATG
JMFF004G04+ TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATGCGCTCTCTC
JMSF012O11+ TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATGCGCTCTCTC
                      ____________________________________________________________
consensus TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATGCGCTCTCTC
 
. : . : . : . : . : . :
JMSF050B05+ GGCGTT
JMFF004G04+ GGCGTTGACGCAGAAGAATGAATAAAGAACGATTTTCTTGAGTGAATTTCGTAAAATGC
JMSF012O11+ GGCGTTGACGCAGAAGAATGAATAAAGAACGATTTTCTTGAGTGAATTTCGTAAAATGCC
                      ____________________________________________________________
consensus GGCGTTGACGCAGAAGAATGAATAAAGAACGATTTTCTTGAGTGAATTTCGTAAAATGCC