clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF004G04 | Sequence | 611 | 011946 (5) | ref|XP_009757253.1| | 4e-35 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nicotiana sylvestris] | |||||
JMSF012O11 | Sequence | 431 | 011946 (5) | 704 | 004607 (11) | gb|AFW63178.1| | 1e-29 | putative DEAD-box ATP-dependent RNA helicase family protein [Zea mays] | |||
JMSF016P03 | Sequence | 457 | 011946 (5) | ref|XP_009757253.1| | 1e-14 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nicotiana sylvestris] | 725 | 004607 (11) | gb|AFW63178.1| | 2e-32 | putative DEAD-box ATP-dependent RNA helicase family protein [Zea mays] |
JMSF043F14 | Sequence | 848 | 011946 (5) | ref|XP_009757253.1| | 3e-107 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nicotiana sylvestris] | 820 | 004607 (11) | ref|NP_001132565.1| | 2e-58 | uncharacterized protein LOC100194030 [Zea mays] gb|ACF81456.1| unknown [Zea mays |
JMSF050B05 | Sequence | 649 | 011946 (5) | ref|XP_009757253.1| | 4e-44 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Nicotiana sylvestris] | 780 | 004607 (11) | gb|AFW63178.1| | 2e-34 | putative DEAD-box ATP-dependent RNA helicase family protein [Zea mays] |
This contig is upended
. : . : . : . : . : . :
JMSF043F14+ CAAAATGCAGATGCCCTTTTTGGCAAGATCAAGTATTNTTCCAGGAAGTTCCAACA
____________________________________________________________
consensus CAAAATGCAGATGCCCTTTTTGGCAAGATCAAGTATTNTTCCAGGAAGTTCCAACA
. : . : . : . : . : . :
JMSF043F14+ AGTAAATGGACTGGTTGATACAACCGCATGATATCATCTTTCAAATTAGTTCCTCCAGTA
____________________________________________________________
consensus AGTAAATGGACTGGTTGATACAACCGCATGATATCATCTTTCAAATTAGTTCCTCCAGTA
. : . : . : . : . : . :
JMSF043F14+ GAAACCATTACTTGTATCTTCAAGTGTTTACCAAGTTCCTTACAAACTTGAGACGTCTGA
____________________________________________________________
consensus GAAACCATTACTTGTATCTTCAAGTGTTTACCAAGTTCCTTACAAACTTGAGACGTCTGA
. : . : . : . : . : . :
JMSF043F14+ AGTGCTAACTCTCTAGTAGGGACAAGTATAACAACTTGAATGACATTAGTCTCTGTATCA
____________________________________________________________
consensus AGTGCTAACTCTCTAGTAGGGACAAGTATAACAACTTGAATGACATTAGTCTCTGTATCA
. : . : . : . : . : . :
JMSF043F14+ ATTTTTTCTAGTGCGGGAATACAAAAGGCAGCTGTTTTCCCAGTTCCATTTTTAGCTCTA
JMSF050B05+ GAATACAAAAGGCAGCTGTTTTCCCAGTTCCATTTTTAGCTCTA
____________________________________________________________
consensus ATTTTTTCTAGTGCGGGAATACAAAAGGCAGCTGTTTTCCCAGTTCCATTTTTAGCTCTA
. : . : . : . : . : . :
JMSF043F14+ GCAAGAATATCGCTCCCAGTAAGTGCAATTGGGATACTCTCTTCCTGAATGGGAGAAGGT
JMSF050B05+ GCAAGAATATCGCTCCCAGTAAGTGCAATTGGGATACTCTCTTCCTGAATGGGAGAAGGT
JMFF004G04+ ATGGGAGAAGGT
____________________________________________________________
consensus GCAAGAATATCGCTCCCAGTAAGTGCAATTGGGATACTCTCTTCCTGAATGGGAGAAGGT
. : . : . : . : . : . :
JMSF043F14+ CTCTCAAACCCTTTCTCATATATCCCCATAAGTAGCTCACGTTTCAAGAAGTAATCTTCA
JMSF050B05+ CTCTCAAACCCTTTCTCATATATCCCCATAAGTAGCTCACGTTTCAAGAAGTAATCTTCA
JMFF004G04+ CTCTCAAACCCTTTTTCATATATCCCCATAAGTAGCTCACGTTTCAAGAAGTAATCTTCA
____________________________________________________________
consensus CTCTCAAACCCTTTCTCATATATCCCCATAAGTAGCTCACGTTTCAAGAAGTAATCTTCA
. : . : . : . : . : . :
JMSF043F14+ AACTCATTTCCTTTTGTTGCAGTCACATCCTCTGTCCTATAACGTGTATCAGGCGCTGGT
JMSF050B05+ AACTCATTTCCTTTTGTTGCAGTCACATC--CTGTCCTATAACGTGTATCAGGCGCTGGT
JMSF016P03+ GCAGTCACATCCTCTGTCCTATAACGTGTATCAGGCGCTGGT
JMFF004G04+ AACTCATTTCCTTTTGTTGCAGTCACATCCTCTGTCCTATAACGTGTATCAGTCGCTGGT
____________________________________________________________
consensus AACTCATTTCCTTTTGTTGCAGTCACATCCTCTGTCCTATAACGTGTATCAGGCGCTGGT
. : . : . : . : . : . :
JMSF043F14+ ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
JMSF050B05+ ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
JMSF016P03+ ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
JMFF004G04+ ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
JMSF012O11+ ATTGTATAGTT
____________________________________________________________
consensus ATATTTAGTCGAGCCTTCCAATCTTGAGAGCTCGAATCAATCCCTTCGGATTGTATAGTT
. : . : . : . : . : . :
JMSF043F14+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
JMSF050B05+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
JMSF016P03+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
JMFF004G04+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
JMSF012O11+ TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
____________________________________________________________
consensus TTCAAGACTTCGTTAGAGCTAGATTCCGAGGCGGCAGCACTAGGGTTCCGCCGCAGCCAC
. : . : . : . : . : . :
JMSF043F14+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
JMSF050B05+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
JMSF016P03+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
JMFF004G04+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
JMSF012O11+ TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
____________________________________________________________
consensus TGCTGTTGTTGTTGTTGTTGTTGTTGTTGCGGCTGATTCTGCAAGGTCCGCTGACCATAC
. : . : . : . : . : . :
JMSF043F14+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
JMSF050B05+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
JMSF016P03+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
JMFF004G04+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
JMSF012O11+ TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
____________________________________________________________
consensus TGTTGGGGCTGAGGAGGGTTCTGCTGCGCGTACTGGTAATGAGGGTTCCGTGGCTGATTA
. : . : . : . : . : . :
JMSF043F14+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
JMSF050B05+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
JMSF016P03+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
JMFF004G04+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
JMSF012O11+ TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
____________________________________________________________
consensus TAACCGCCGGAGTTATGGCCTGATCGAAAGCCGCCTCCACCGTAACCGCTGCCTCCGCCG
. : . : . : . : . : . :
JMSF043F14+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
JMSF050B05+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
JMSF016P03+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
JMFF004G04+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
JMSF012O11+ CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
____________________________________________________________
consensus CCGCGTCCGTTCCCGTTCCCGATCCCGGGCGGATACCTCCCTCGCGAATTCATCACAGAT
. : . : . : . : . : . :
JMSF043F14+ TAACGAAAA
JMSF050B05+ TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATGCGCTCTCTC
JMSF016P03+ TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATG
JMFF004G04+ TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATGCGCTCTCTC
JMSF012O11+ TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATGCGCTCTCTC
____________________________________________________________
consensus TAACGAAAACTCTATCCCGCTAGGCCAAGACGTTCTCCAAATCCAACAATGCGCTCTCTC
. : . : . : . : . : . :
JMSF050B05+ GGCGTT
JMFF004G04+ GGCGTTGACGCAGAAGAATGAATAAAGAACGATTTTCTTGAGTGAATTTCGTAAAATGC
JMSF012O11+ GGCGTTGACGCAGAAGAATGAATAAAGAACGATTTTCTTGAGTGAATTTCGTAAAATGCC
____________________________________________________________
consensus GGCGTTGACGCAGAAGAATGAATAAAGAACGATTTTCTTGAGTGAATTTCGTAAAATGCC