Contig 011932:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016D23Sequence489011932 (3)679002681 (2)ref|XP_006341915.1|2e-09PREDICTED: zinc finger protein JACKDAW-like [Solanum tuberosum]
JMFF043P12Sequence633011932 (3)gb|KDO84481.1|1e-23hypothetical protein CISIN_1g026210mg [Citrus sinensis] gb|KDO84482.1| hypotheti610002681 (2)ref|XP_006341915.1|1e-05PREDICTED: zinc finger protein JACKDAW-like [Solanum tuberosum]
JMSF011B20Sequence255011932 (3)

Alignment

This contig is upended


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JMFF043P12+                                     CCGGTGAAGCTGCAAATTCTGGTCCCGCTGAAAC
                      ____________________________________________________________
consensus                                       CCGGTGAAGCTGCAAATTCTGGTCCCGCTGAAAC
 
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JMFF043P12+           CCTNTGCTGCAGATCTCGCACACGAATCTGTTCGTCGCCAGGAGAGATTTCGGCGATAAA
                      ____________________________________________________________
consensus             CCTNTGCTGCAGATCTCGCACACGAATCTGTTCGTCGCCAGGAGAGATTTCGGCGATAAA
 
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JMFF043P12+           GCTATCACTTCCGCATCCGGATCGGGAGTTCCGGGAAGGCTTCGCCTTCTCTTGGATACA
JMFF016D23+                                                             CTTGGATACA
                      ____________________________________________________________
consensus             GCTATCACTTCCGCATCCGGATCGGGAGTTCCGGGAAGGCTTCGCCTTCTCTTGGATACA
 
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JMFF043P12+           ACAGTGAGCTGAGCGGACGGTTCTCCCTCTGAAGGAGCCGCCATTGACGAGGAATTCCGG
JMFF016D23+           ACAGTGAGCTGAGCGGACGGTTCTCCCTCTGAAGGAGCCGCCATTGACGAGGAATTCCGG
                      ____________________________________________________________
consensus             ACAGTGAGCTGAGCGGACGGTTCTCCCTCTGAAGGAGCCGCCATTGACGAGGAATTCCGG
 
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JMFF043P12+           AGCTCTTCCATATGATTTTTTGTTTTTGTTCATGAACTGATATATCGAGCCCACACCTAC
JMFF016D23+           AGCTCTTCCATATGATTTTTTGTTTTTGTTCATGAACTGATATATCGAGCCCACACCTAC
                      ____________________________________________________________
consensus             AGCTCTTCCATATGATTTTTTGTTTTTGTTCATGAACTGATATATCGAGCCCACACCTAC
 
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JMFF043P12+           CAAAAACCTCTGAAAGCTTCTAAAGTTACAGTATAAGCCGGAAAAAGAAAAGTGAACGGA
JMFF016D23+           CAAAAACCTCTGAAAGCTTCTAAAGTTACAGTATAAGCCGGAAAAAGAAAAGTGAACGGA
                      ____________________________________________________________
consensus             CAAAAACCTCTGAAAGCTTCTAAAGTTACAGTATAAGCCGGAAAAAGAAAAGTGAACGGA
 
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JMFF043P12+           GAATCAAGAAAAGGCTGGGTATGTTCCCGAAACAGGACAAAGCTTCATCTGCAGTCGTTG
JMFF016D23+           GAATCAAGAAAAGGCTGGGTATGTTCCCGAAACAGGACAAAGCTTCATCTGCAGTCGTTG
JMSF011B20+                                                        CATCTGCAGTCGTTG
                      ____________________________________________________________
consensus             GAATCAAGAAAAGGCTGGGTATGTTCCCGAAACAGGACAAAGCTTCATCTGCAGTCGTTG
 
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JMFF043P12+           GAAACTGTTTCTCTTTATTCTGGAAATTTTTTTGGGGCCTTCTTATTCTGGGAAATGGCA
JMFF016D23+           GAAACTGTTTCTCTTTATTCTGGAAATTTTTTTGGGGCCTTCTTATTCTGGGAAATGGCA
JMSF011B20+           GAAACTGTTTCTCTTTATTCTGGAAATTTTTTTGGGGCCTTCTTATTCTGGGAAATGGCA
                      ____________________________________________________________
consensus             GAAACTGTTTCTCTTTATTCTGGAAATTTTTTTGGGGCCTTCTTATTCTGGGAAATGGCA
 
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JMFF043P12+           GCGATTATACGAGGAGGAAGAAGAAAAATCTGTGCTTGAATCGAGCAAAATGGGAACGGG
JMFF016D23+           GCGATTATACGAGGAGGAAGAAGAAAAATCTGTGCTTGAATCGAGCAAAATGGGAACGGG
JMSF011B20+           GCGATTATACGAGGAGGAAGAAGAAAAATCTGTGCTTGAATCGAGCAAAATGGGAACGGG
                      ____________________________________________________________
consensus             GCGATTATACGAGGAGGAAGAAGAAAAATCTGTGCTTGAATCGAGCAAAATGGGAACGGG
 
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JMFF043P12+           ACGGGAATATTGAGTCGGTCGGCAAATCAAGATTCTTCGCAGCTCTCTTCCCGCACCATG
JMFF016D23+           ACGGGAATATTGAGTCGGTCGGCAAATCAAGATTCTTCGCAGCTCTCTTCCCGCACCATG
JMSF011B20+           ACGGGAATATTGAGTCGGTCGGCAAATCAAGATTCTTCGCAGCTCTCTTCCCGCACCATG
                      ____________________________________________________________
consensus             ACGGGAATATTGAGTCGGTCGGCAAATCAAGATTCTTCGCAGCTCTCTTCCCGCACCATG
 
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JMFF043P12+           TTCATACATGACGGCGTTGGCATTTACACAGACGCACGGATATTTGAAAGAAGCAAA   
JMFF016D23+           TTCATACATGACGGCGTTGGCATTTACACAGACGCACGGATATTTGAAAGAAGCAAA   
JMSF011B20+           TTCATACATGACGGCGTTGGCATTTACACAGACGCACGGATATTTGAAAGAAGCAAATGC
                      ____________________________________________________________
consensus             TTCATACATGACGGCGTTGGCATTTACACAGACGCACGGATATTTGAAAGAAGCAAATGC