Contig 011929:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN038H12Sequence615011929 (2)sp|P04715.1|RBS2_PETHY9e-45RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast
JMSF010H03Sequence361011929 (2)ref|XP_009595081.1|9e-13PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Nicoti699002781 (3)sp|P04715.1|RBS2_PETHY2e-51RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast

Alignment

This contig is upended


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JMFN038H12+                        CCGCAACCACCTGAGTCGCGTCGGTGCACCCGAACATGGGCAGCTTC
                      ____________________________________________________________
consensus                          CCGCAACCACCTGAGTCGCGTCGGTGCACCCGAACATGGGCAGCTTC
 
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JMFN038H12+           CACATGGTCCAGTATCTTCCGTCATAGTACCCGGGTGAAGCGTGCCATTCACGGTACACG
                      ____________________________________________________________
consensus             CACATGGTCCAGTATCTTCCGTCATAGTACCCGGGTGAAGCGTGCCATTCACGGTACACG
 
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JMFN038H12+           AATCCTTTCTGCACCCCGACCCATCAAAACTAAAAGTTTACACTAAATCAAATTAAATTA
                      ____________________________________________________________
consensus             AATCCTTTCTGCACCCCGACCCATCAAAACTAAAAGTTTACACTAAATCAAATTAAATTA
 
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JMFN038H12+           AATAATAGAGTAGTAGTAGTTGATTTTGACCTCGGTCTCGAATTCCAAGCAAGGAACCCA
                      ____________________________________________________________
consensus             AATAATAGAGTAGTAGTAGTTGATTTTGACCTCGGTCTCGAATTCCAAGCAAGGAACCCA
 
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JMFN038H12+           TCCCTTGTTCAAAAGGTACTCCACTTGTTTGAGCAATTGCTCGGTGCTCAAGGGAGGCAG
JMSF010H03+                                                                      G
                      ____________________________________________________________
consensus             TCCCTTGTTCAAAAGGTACTCCACTTGTTTGAGCAATTGCTCGGTGCTCAAGGGAGGCAG
 
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JMFN038H12+           GTATGACAGGGTCTCGAACTTCTTCAACCCGAATGGGGGCCACACCTGAACTCACATATA
JMSF010H03+           GTATGACAGGGTCTCGAACTTCTTCAACCCGAATGGGGGCCACACCTGAACTCACATATA
                      ____________________________________________________________
consensus             GTATGACAGGGTCTCGAACTTCTTCAACCCGAATGGGGGCCACACCTGAACTCACATATA
 
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JMFN038H12+           TATACGGCATAGTTAACTCAGTACACACCATCATACAGTAACAGTTAAAGTTCACTTAAG
JMSF010H03+           TATACGGCATAGTTAACTCAGTACACACCATCATACAGTAACAGTTAAAGTTCACTTAAG
                      ____________________________________________________________
consensus             TATACGGCATAGTTAACTCAGTACACACCATCATACAGTAACAGTTAAAGTTCACTTAAG
 
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JMFN038H12+           TGTATATATATTAGTATACCTGCATGCATTGTACTCGGCTACCGTTGGTGGAGATGGAAG
JMSF010H03+           TGTATATATATTAGTATACCTGCATGCATTGTACTCGGCTACCGTTGGTGGAGATGGAAG
                      ____________________________________________________________
consensus             TGTATATATATTAGTATACCTGCATGCATTGTACTCGGCTACCGTTGGTGGAGATGGAAG
 
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JMFN038H12+           TAAAGTCGGCGGCGGACTTCTTGGTGACGGGGAAGGAGGCGGTGGACTTGAGGCCGGTGA
JMSF010H03+           TAAAGTCGGCGGCGGACTTCTTGGTGACGGGGAAGGAGGCGGTGGACTTGAGGCCGGTGA
                      ____________________________________________________________
consensus             TAAAGTCGGCGGCGGACTTCTTGGTGACGGGGAAGGAGGCGGTGGACTTGAGGCCGGTGA
 
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JMFN038H12+           AGGGGGCGACCATGCTGGCTTGGGCAGCGGTGGCGCGGGAGGCGATGGCGGTGGAGGAGA
JMSF010H03+           AGGGGGCGACCATGCTGGCTTGGGCAGCGGTGGCGCGGGAGGCGATGGCGGTGGAGGAGA
                      ____________________________________________________________
consensus             AGGGGGCGACCATGCTGGCTTGGGCAGCGGTGGCGCGGGAGGCGATGGCGGTGGAGGAGA
 
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JMFN038H12+           GGACTGAGGAGGCCATTGCTAGCTGCCT                                
JMSF010H03+           GGACTGAGGAGGCCATTGCTAGCTGCCTGTGCTGCACTGAGTACTTGTTACTTTGTAATC
                      ____________________________________________________________
consensus             GGACTGAGGAGGCCATTGCTAGCTGCCTGTGCTGCACTGAGTACTTGTTACTTTGTAATC