Contig 011927:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008F06Sequence401011927 (4)gb|KDP26452.1|1e-18hypothetical protein JCGZ_17610 [Jatropha curcas]783005621 (3)gb|AIU48889.1|3e-93transducin/WD40 repeat-like superfamily protein, partial [Manihot esculenta]
JMFF009A02Sequence396011927 (4)gb|KDP26452.1|1e-18hypothetical protein JCGZ_17610 [Jatropha curcas]669005621 (3)gb|AIU48905.1|8e-67transducin/WD40 repeat-like superfamily protein, partial [Vitis vinifera]
JMFS056C06Sequence614011927 (4)gb|KDP26452.1|5e-20hypothetical protein JCGZ_17610 [Jatropha curcas]
JMSF010B14Sequence251011927 (4)ref|XP_009764022.1|8e-04PREDICTED: WD repeat-containing protein 70 [Nicotiana sylvestris]741005621 (3)gb|AIU48905.1|6e-78transducin/WD40 repeat-like superfamily protein, partial [Vitis vinifera]

Alignment

This contig is upended


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JMFS056C06+                                          GGGCCAATCATCGGCCCGTCCTCCTCCTC
                      ____________________________________________________________
consensus                                            GGGCCAATCATCGGCCCGTCCTCCTCCTC
 
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JMFS056C06+           GTCTACAGGAGGCGGCCGTGGAGGTCCAATCACGGGCACAACCTCATCCTCATCCTCCGT
                      ____________________________________________________________
consensus             GTCTACAGGAGGCGGCCGTGGAGGTCCAATCACGGGCACAACCTCATCCTCATCCTCCGT
 
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JMFF009A02+                                                              CTCCTCCTC
JMFF008F06+                                                              CTCCTCCTC
JMFS056C06+           CGCAACTGAAGGCCGAGGTGGCCCAATCATGGCCGCCTCCTCCTTCTCTTCCTCCTCCTC
                      ____________________________________________________________
consensus             CGCAACTGAAGGCCGAGGTGGCCCAATCATGGCCGCCTCCTCCTTCTCTTCCTCCTCCTC
 
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JMFF009A02+           CTCTCCATTCCCCGAATCCAAATCAGCCCCGGGCCGCGGAGGCCCAAACGTCACGCTCTT
JMFF008F06+           CTCTCCATTCCCCGAATCCAAATCAGCCCCGGGCCGCGGAGGCCCAAACGTCACGCTCTT
JMFS056C06+           CTCTCCATTCCCCGAATCCAAATCAGCCCCGGGCCGCGGAGGCCCAAACGTCACGCTCTT
                      ____________________________________________________________
consensus             CTCTCCATTCCCCGAATCCAAATCAGCCCCGGGCCGCGGAGGCCCAAACGTCACGCTCTT
 
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JMFF009A02+           CTTCGAATTGCTAGGGTTAGGCTTCTTGAACGACTCTACCCAAGCTTGGGAAGTCGAAGA
JMFF008F06+           CTTCGAATTGCTAGGGTTAGGCTTCTTGAACGACTCTACCCAAGCTTGGGAAGTCGAAGA
JMFS056C06+           CTTCGAATTGCTAGGGTTAGGCTTCTTGAACGACTCTACCCAAGCTTGGGAAGTCGAAGA
                      ____________________________________________________________
consensus             CTTCGAATTGCTAGGGTTAGGCTTCTTGAACGACTCTACCCAAGCTTGGGAAGTCGAAGA
 
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JMFF009A02+           TATAGATGGAAAAGGCTTATCTTTGCTCGCAGAAGAAGAGGGATTAGGTTTTCCATCGGC
JMFF008F06+           TATAGATGGAAAAGGCTTATCTTTGCTCGCAGAAGAAGAGGGATTAGGTTTTCCATCGGC
JMFS056C06+           TATAGATGGAAAAGGCTTATCTTTGCTCGCAGAAGAAGAGGGATTAGGTTTTCCATCGGC
                      ____________________________________________________________
consensus             TATAGATGGAAAAGGCTTATCTTTGCTCGCAGAAGAAGAGGGATTAGGTTTTCCATCGGC
 
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JMFF009A02+           GCCGGAGCGGCGGGTGGCGCTGTGGACGATTTCGAGAGGGGTTTGAGATTGCGCTTGCTT
JMFF008F06+           GCCGGAGCGGCGGGTGGCGCTGTGGACGATTTCGAGAGGGGTTTGAGATTGCGCTTGCTT
JMFS056C06+           GCCGGAGCGGCGGGTGGCGCTGTGGACGATTTCGAGAGGGGTTTGAGATTGCGCTTGCTT
JMSF010B14+                                                            TGCGCTTGCTT
                      ____________________________________________________________
consensus             GCCGGAGCGGCGGGTGGCGCTGTGGACGATTTCGAGAGGGGTTTGAGATTGCGCTTGCTT
 
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JMFF009A02+           GCCGAAAGTTAGAGGAAACTGAGCCCTAATTCCGTCGTACATCTCCGATTCGTCCGCCAT
JMFF008F06+           GCCGAAAGTTAGAGGAAACTGAGCCCTAATTCCGTCGTACATCTCCGATTCGTCCGCCAT
JMFS056C06+           GCCGAAAGTTAGAGGAAACTGAGCCCTAATTCCGTCGTACATCTCCGATTCGTCCGCCAT
JMSF010B14+           GCCGAAAGTTAGAGGAAACTGAGCCCTAATTCCGTCGTACATCTCCGATTCGTCCGCCAT
                      ____________________________________________________________
consensus             GCCGAAAGTTAGAGGAAACTGAGCCCTAATTCCGTCGTACATCTCCGATTCGTCCGCCAT
 
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JMFF009A02+           CCCGTCTTCAACACCGGCGTGTAGAGGTGATTTTATCTCGGCGTAGACTGTAGAGAAGCT
JMFF008F06+           CCCGTCTTCAACACCGGCGTGTAGAGGTGATTTTATCTCGGCGTAGACTGTAGAGAAGCT
JMFS056C06+           CCCGTCTTCAACACCGGCGTGTAGAGGTGATTTTATCTCGGCGTAGACTGTAGAGAAGCT
JMSF010B14+           CCCGTCTTCAACACCGGCGTGTAGAGGTGATTTTATCTCGGCGTAGACTGTAGAGAAGCT
                      ____________________________________________________________
consensus             CCCGTCTTCAACACCGGCGTGTAGAGGTGATTTTATCTCGGCGTAGACTGTAGAGAAGCT
 
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JMFF009A02+           CCGGAGCTCTTCTGTGTTCCCACTTAC                                 
JMFF008F06+           CCGGAGCTCTTCTGTGTTCCCACTTAC                                 
JMFS056C06+           CCGGAGCTCTTCTGTGTTCCCACTTACAAACACCTTTTTGATTTTGAAGTCATTTATACA
JMSF010B14+           CCGGAGCTCTTCTGTGTTCCCACTTACAAACACCTTTTTGATTTTGAAGTCATTTATACA
                      ____________________________________________________________
consensus             CCGGAGCTCTTCTGTGTTCCCACTTACAAACACCTTTTTGATTTTGAAGTCATTTATACA
 
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JMFS056C06+           TACCTTCTGCCGCCATAGCTCACTGTAAACCTGACCAACTATAAA               
JMSF010B14+           TACCTTCTGCCGCCATAGCTCACTGTAAACCTGACCAACTATAAACTTCGTCAGCAGTTC
                      ____________________________________________________________
consensus             TACCTTCTGCCGCCATAGCTCACTGTAAACCTGACCAACTATAAACTTCGTCAGCAGTTC