Contig 011917:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001O23Sequence540011917 (6)emb|CDP01661.1|5e-47unnamed protein product [Coffea canephora]721013591 (7)emb|CBI28627.3|6e-111unnamed protein product [Vitis vinifera]
JMFS024H05Sequence595011917 (6)ref|XP_009587166.1|2e-52PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis]
JMFS069H09Sequence612011917 (6)ref|XP_009587166.1|3e-60PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis]
JMFS081H04Sequence630011917 (6)ref|XP_009587166.1|2e-55PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis]
JMSF008J09Sequence373011917 (6)emb|CDP01661.1|5e-16unnamed protein product [Coffea canephora]695013591 (7)emb|CBI28627.3|2e-110unnamed protein product [Vitis vinifera]
JMSF053K09Sequence648011917 (6)ref|XP_009587166.1|6e-56PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis]928013591 (7)emb|CAN77178.1|8e-162hypothetical protein VITISV_021790 [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS069H09+ GCAGTGTTGAAGCA
                      ____________________________________________________________
consensus GCAGTGTTGAAGCA
 
. : . : . : . : . : . :
JMFS069H09+ TTTCTAAGGCTCTCGGGGAGTTCCCAAGCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
JMFF001O23+ CAGAT
JMFS024H05+ GCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
JMFS081H04+ TCGGGGAGTTCCCAAGCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
JMSF053K09+ TCGGGGAGTTCCCAAGCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
                      ____________________________________________________________
consensus TTTCTAAGGCTCTCGGGGAGTTCCCAAGCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
 
. : . : . : . : . : . :
JMFS069H09+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
JMFF001O23+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
JMFS024H05+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
JMFS081H04+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
JMSF053K09+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
                      ____________________________________________________________
consensus TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
 
. : . : . : . : . : . :
JMFS069H09+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
JMFF001O23+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
JMFS024H05+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
JMFS081H04+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
JMSF053K09+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
                      ____________________________________________________________
consensus AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
 
. : . : . : . : . : . :
JMFS069H09+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
JMFF001O23+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
JMFS024H05+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
JMFS081H04+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
JMSF053K09+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
                      ____________________________________________________________
consensus TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
 
. : . : . : . : . : . :
JMFS069H09+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMFF001O23+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMFS024H05+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMFS081H04+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMSF053K09+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMSF008J09+ ATCTGAGCAACCC
                      ____________________________________________________________
consensus CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
 
. : . : . : . : . : . :
JMFS069H09+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMFF001O23+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMFS024H05+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMFS081H04+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMSF053K09+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMSF008J09+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
                      ____________________________________________________________
consensus ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
 
. : . : . : . : . : . :
JMFS069H09+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMFF001O23+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMFS024H05+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMFS081H04+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMSF053K09+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMSF008J09+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
                      ____________________________________________________________
consensus CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
 
. : . : . : . : . : . :
JMFS069H09+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMFF001O23+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMFS024H05+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMFS081H04+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMSF053K09+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMSF008J09+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
                      ____________________________________________________________
consensus TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
 
. : . : . : . : . : . :
JMFS069H09+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMFF001O23+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMFS024H05+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMFS081H04+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMSF053K09+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMSF008J09+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
                      ____________________________________________________________
consensus TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
 
. : . : . : . : . : . :
JMFS069H09+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAA
JMFF001O23+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAG
JMFS024H05+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
JMFS081H04+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
JMSF053K09+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
JMSF008J09+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
                      ____________________________________________________________
consensus AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
 
. : . : . : . : . : . :
JMFS024H05+ ACTTTTTCAGTAATGGAGGGTT
JMFS081H04+ ACTTTTTCAGTAATGGAGGGTTTTGATGGGGGTTGGGTGTTG
JMSF053K09+ ACTTTTTCAGTAATGGAGGGTTTTGATGGGGGTTGGGTGTTGTAAAACTAGGAAAACC
JMSF008J09+ ACTTTTTCAGTAATGGAGGGTTTTGATGGGGGTTGGGTGTTGTAAAACTAGGAAAACCCC
                      ____________________________________________________________
consensus ACTTTTTCAGTAATGGAGGGTTTTGATGGGGGTTGGGTGTTGTAAAACTAGGAAAACCCC