Contig 011916:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005P11Sequence264011916 (2)ref|XP_009790563.1|78.6PREDICTED: uncharacterized protein LOC104238005 [Nicotiana sylvestris]372008459 (3)
JMSF008H07Sequence397011916 (2)ref|XP_002275599.1|108PREDICTED: uncharacterized protein LOC100264117 [Vitis vinifera] emb|CBI36934.3|441003839 (4)ref|XP_011079570.1|68.9PREDICTED: uncharacterized protein LOC105163060 [Sesamum indicum]

Alignment

This contig is upended


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JMSF008H07+                                  GGAGATAAAGCAAAGATCGAGCCTTTNAACTCCAGGG
                      ____________________________________________________________
consensus                                    GGAGATAAAGCAAAGATCGAGCCTTTNAACTCCAGGG
 
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JMSF005P11+                                                                 AAGCTA
JMSF008H07+           CTAATTCGAATCGAGGAGAAAGAGTCAGGGCAGTGTCCAGAAGGTTTATAGCGGAAGCTA
                      ____________________________________________________________
consensus             CTAATTCGAATCGAGGAGAAAGAGTCAGGGCAGTGTCCAGAAGGTTTATAGCGGAAGCTA
 
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JMSF005P11+           TCTCGCTCTGTTCTCGACTCGAAATCAGAATCCTTGCCTCCTTCACATATTTCTCCACAA
JMSF008H07+           TCTCGCTCTGTTCTCGACTCGAAATCAGAATCCTTGCCTCCTTCACATATTTCTCCACAA
                      ____________________________________________________________
consensus             TCTCGCTCTGTTCTCGACTCGAAATCAGAATCCTTGCCTCCTTCACATATTTCTCCACAA
 
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JMSF005P11+           TCTTTCTATTGGTAAGCCACCAGTGCTTCTTTTCTCCACCGGCGAGAGATGGAGATCCGG
JMSF008H07+           TCTTTCTATTGGTAAGCCACCAGTGCTTCTTTTCTCCACCGGCGAGAGATGGAGATCCGG
                      ____________________________________________________________
consensus             TCTTTCTATTGGTAAGCCACCAGTGCTTCTTTTCTCCACCGGCGAGAGATGGAGATCCGG
 
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JMSF005P11+           CCATTGCTGTCGCGCACGGATCAAACATTAATCTTTCTACACTCTTGATGTATTTATTGT
JMSF008H07+           CCATTGCTGTCGCGCACGGATCAAACATTAATCTTTCTACACTCTTGATGTATTTATTGT
                      ____________________________________________________________
consensus             CCATTGCTGTCGCGCACGGATCAAACATTAATCTTTCTACACTCTTGATGTATTTATTGT
 
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JMSF005P11+           ATCTCACACCGTCATTCTCCCTCTCTTTCTCTGTAAGCTAGAGAGAGAGATAGAGAGGGG
JMSF008H07+           ATCTCACACCGTCATTCTCCCTCTCTTTCTCTGTAAGCTAGAGAGAGAGATAGAGAGGGG
                      ____________________________________________________________
consensus             ATCTCACACCGTCATTCTCCCTCTCTTTCTCTGTAAGCTAGAGAGAGAGATAGAGAGGGG
 
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JMSF005P11+           GATTTGAACCAAGTGT                                            
JMSF008H07+           GATTTGAACCAAGTGTAGAGAGAGAGGAGAGAAGAGAAGTGGGTTAATACAAAGGTGATC
                      ____________________________________________________________
consensus             GATTTGAACCAAGTGTAGAGAGAGAGGAGAGAAGAGAAGTGGGTTAATACAAAGGTGATC