Contig 011910:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007H19Sequence369011910 (2)483005123 (8)emb|CDP06507.1|1e-81unnamed protein product [Coffea canephora]
JMSF033I16Sequence660011910 (2)ref|XP_004238013.1|1e-51PREDICTED: GATA transcription factor 24-like isoform X2 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF033I16+ CTTTGAGCAACCTCCTTCC
                      ____________________________________________________________
consensus CTTTGAGCAACCTCCTTCC
 
. : . : . : . : . : . :
JMSF033I16+ GGACAGTGTATCTAATTTTCTTATCATAACATCTCTCCTTCCTTTTCTCACGGAACCTAA
                      ____________________________________________________________
consensus GGACAGTGTATCTAATTTTCTTATCATAACATCTCTCCTTCCTTTTCTCACGGAACCTAA
 
. : . : . : . : . : . :
JMSF033I16+ CCAGAGAGGCTATTCTTCTTGAAAGATTGGGGTGCTTTGGCATATCATCCTCAACCTTGC
                      ____________________________________________________________
consensus CCAGAGAGGCTATTCTTCTTGAAAGATTGGGGTGCTTTGGCATATCATCCTCAACCTTGC
 
. : . : . : . : . : . :
JMSF033I16+ TATTCAAAGGAACATCTACAGAGGGCACAGCAGTAGGAATATCAGGTCCCCCCAAAAGCA
                      ____________________________________________________________
consensus TATTCAAAGGAACATCTACAGAGGGCACAGCAGTAGGAATATCAGGTCCCCCCAAAAGCA
 
. : . : . : . : . : . :
JMSF033I16+ AGAGCACTGCTTGAACCTTCTCGGGAGTGACGGCAGGGAAGACATAGACTTCACCTTCAA
                      ____________________________________________________________
consensus AGAGCACTGCTTGAACCTTCTCGGGAGTGACGGCAGGGAAGACATAGACTTCACCTTCAA
 
. : . : . : . : . : . :
JMSF033I16+ AAGCAAGAGTTAGTTCACTAGTCCTCGACGGCGCCACCACAACTCCGCCTTTCAGGCGTT
JMSF007H19+ TCAGGCGTT
                      ____________________________________________________________
consensus AAGCAAGAGTTAGTTCACTAGTCCTCGACGGCGCCACCACAACTCCGCCTTTCAGGCGTT
 
. : . : . : . : . : . :
JMSF033I16+ CAGTCAGAGAGCCGCCGCGGTGGTTCTTAGAGTTTACTCGACTGTACTCCTCCTCATCCA
JMSF007H19+ CAGTCAGAGAGCCGCCGCGGTGGTTCTTAGAGTTTACTCGACTGTACTCCTCCTCATCCA
                      ____________________________________________________________
consensus CAGTCAGAGAGCCGCCGCGGTGGTTCTTAGAGTTTACTCGACTGTACTCCTCCTCATCCA
 
. : . : . : . : . : . :
JMSF033I16+ TAGTATCATCATCTTCGTACGTGCCGTTATCGTCATCCACGTCATCTAAACTTACGGCCG
JMSF007H19+ TAGTATCATCATCTTCGTACGTGCCGTTATCGTCATCCACGTCATCTAAACTTACGGCCG
                      ____________________________________________________________
consensus TAGTATCATCATCTTCGTACGTGCCGTTATCGTCATCCACGTCATCTAAACTTACGGCCG
 
. : . : . : . : . : . :
JMSF033I16+ GAGGCGCGTGATCGCGGACGGGAATCGCCTGCAGTGGCCGGGGGTTCGCCGCCATCAACC
JMSF007H19+ GAGGCGCGTGATCGCGGACGGGAATCGCCTGCAGTGGCCGGGGGTTCGCCGCCATCAACC
                      ____________________________________________________________
consensus GAGGCGCGTGATCGCGGACGGGAATCGCCTGCAGTGGCCGGGGGTTCGCCGCCATCAACC
 
. : . : . : . : . : . :
JMSF033I16+ AAACTTTCAAGTTCCAATCATCAACTTATTATTCTTCATGCAACTAAATCCACCTGCAGC
JMSF007H19+ AAACTTTCAAGTTCCAATCATCAACTTATTATTCTTCATGCAACTAAATCCACCTGCAGC
                      ____________________________________________________________
consensus AAACTTTCAAGTTCCAATCATCAACTTATTATTCTTCATGCAACTAAATCCACCTGCAGC
 
. : . : . : . : . : . :
JMSF033I16+ TTGAATTCCAAGTAATCCTGTTTTCCTATATTATTTAATTCCTTTTAAGATTAAATTCAG
JMSF007H19+ TTGAATTCCAAGTAATCCTGTTTTCCTATATTATTTAATTCCTTTTAAGATTAAATTCAG
                      ____________________________________________________________
consensus TTGAATTCCAAGTAATCCTGTTTTCCTATATTATTTAATTCCTTTTAAGATTAAATTCAG
 
. : . : . : . : . : . :
JMSF033I16+ GATTTCAGAGGAGAGTTCGAGAGTGAGGATAGAAGGAGAC
JMSF007H19+ GATTTCAGAGGAGAGTTCGAGAGTGAGGATAGAAGGAGACAGCGACGCAATGAACAAACC
                      ____________________________________________________________
consensus GATTTCAGAGGAGAGTTCGAGAGTGAGGATAGAAGGAGACAGCGACGCAATGAACAAACC