Contig 011908:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037C13Sequence487011908 (5)gb|AAQ10678.1|1e-34type-B response regulator [Catharanthus roseus]
JMFF050B02Sequence579011908 (5)gb|AAQ10678.1|1e-67type-B response regulator [Catharanthus roseus]528009853 (3)
JMFS094G04Sequence566011908 (5)emb|CDO98804.1|4e-67unnamed protein product [Coffea canephora]
JMSF006N12Sequence267011908 (5)
JMSF032P07Sequence632011908 (5)ref|XP_009591694.1|6e-46PREDICTED: two-component response regulator ARR1-like [Nicotiana tomentosiformi727009853 (3)emb|CDO98804.1|2e-22unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS094G04+ GATGGAGCTCCA
                      ____________________________________________________________
consensus GATGGAGCTCCA
 
. : . : . : . : . : . :
JMFS094G04+ CCGCCCAAACGACACGTGGATTCTTCAAGGTGGATGAATCATCCCTTTATTCGCCTTCAT
                      ____________________________________________________________
consensus CCGCCCAAACGACACGTGGATTCTTCAAGGTGGATGAATCATCCCTTTATTCGCCTTCAT
 
. : . : . : . : . : . :
JMFS094G04+ GGTGTTCGACCTTTCTTTTCTGCGAGCGTATCCAGTTCCCTTCGTTACCGAAGGCGAGTA
                      ____________________________________________________________
consensus GGTGTTCGACCTTTCTTTTCTGCGAGCGTATCCAGTTCCCTTCGTTACCGAAGGCGAGTA
 
. : . : . : . : . : . :
JMFS094G04+ ATCAGCATCGTCGTAAGGTATGTCAGACCGATCTCCGCCTTTTTTTGCACTCAATGATTG
                      ____________________________________________________________
consensus ATCAGCATCGTCGTAAGGTATGTCAGACCGATCTCCGCCTTTTTTTGCACTCAATGATTG
 
. : . : . : . : . : . :
JMFS094G04+ CTCGGGATCCTTTTCCTTCCACTCGGGCTTCCTTTTGCGGACCACATGTTGCCATATGTT
                      ____________________________________________________________
consensus CTCGGGATCCTTTTCCTTCCACTCGGGCTTCCTTTTGCGGACCACATGTTGCCATATGTT
 
. : . : . : . : . : . :
JMFS094G04+ TTTCAGTGCCTCTATACGGACCGGCTTGATCAGATAATCACACGCACCGTGCGTAACGCC
JMFF050B02+ CACGCGCCGTGCGTAACGCC
                      ____________________________________________________________
consensus TTTCAGTGCCTCTATACGGACCGGCTTGATCAGATAATCACACGCGCCGTGCGTAACGCC
 
. : . : . : . : . : . :
JMFS094G04+ CTTCATCGCAACGTTCGTGCTATCGTCGGGTGACATCATAATAACGGGCAGGTCCATCTG
JMFF050B02+ CTTCATCACAACGTTCTTGCTATCGTCGGCTGACATCATAATAACGGGCAGGTCCATCTC
JMSF032P07+ GACATCATAATAACGGGCAGGTCCATCTC
                      ____________________________________________________________
consensus CTTCATCGCAACGTTCTTGCTATCGTCGGGTGACATCATAATAACGGGCAGGTCCATCTC
 
. : . : . : . : . : . :
JMFS094G04+ GAGACCGACATGCTCAAGAAGTTTGAAACCGTCCATGTCGGGCATATGGACATCACTTAT
JMFF050B02+ GAGACCGACATGCTCAAGAAGTTTGAAACCGTCCATGTCGGGCATATGGACATCACTTAT
JMFF037C13+ CATGCTCAAGAAGTTTGAAACCGTCCATGTCGGGCATATGGACATCACTTAT
JMSF032P07+ GAGACCGACATGCTCAAGAAGTTTGAAACCGTCCATGTCGGGCATATGGACATCACTTAT
                      ____________________________________________________________
consensus GAGACCGACATGCTCAAGAAGTTTGAAACCGTCCATGTCGGGCATATGGACATCACTTAT
 
. : . : . : . : . : . :
JMFS094G04+ AACGATATCAAAGCCACTCTTATTTTCCCGAAGCAACGATAGAGCAAGCTCTGCCCTACT
JMFF050B02+ AACGATATCAAAGCCATTCTTATTTTCCCGAAGCAACGATAGAGCAAGCTGTGCCCTATT
JMFF037C13+ AACGATATCAAAGCCATTNTTATTTTCCCGAAGCAACGATAGAGCAAGCTNTGCCCTATT
JMSF032P07+ AACGATATCAAAGCCATTCTTATTTTCCCGAAGCAACGATAGAGCAAGCTNTGCCCTATT
                      ____________________________________________________________
consensus AACGATATCAAAGCCATTCTTATTTTCCCGAAGCAACGATAGAGCAAGCTGTGCCCTATT
 
. : . : . : . : . : . :
JMFS094G04+ GGACTTGGTTACTTCATAGAGGCAGGTCCTAAGCATATTCTCCAAGATCATGAGGCAAGT
JMFF050B02+ GGACTTGGTTACTTCATAGAGGCAGGTCCTAAGCATCTTCTCCAAGATCCTGAGGCAAGT
JMFF037C13+ GGACTTGGTTACTTCATAGAGGCAGGTCCTAAGCATNTTNTCCAAGATCCTGAGGCAAGT
JMSF032P07+ GGACTTGGTTACTTCATAGAGGCAGGTCCTAAGCATNTTNTCCAAGATCCTGAGGCAAGT
                      ____________________________________________________________
consensus GGACTTGGTTACTTCATAGAGGCAGGTCCTAAGCATCTTCTCCAAGATCCTGAGGCAAGT
 
. : . : . : . : . : . :
JMFS094G04+ TGGGTCATCATCC
JMFF050B02+ TGGGTCATCATCCACAACCAGCACCCGGAGACCCGCCGGAAACTTGTCGGAGACCGCATC
JMFF037C13+ TGGGTCATCATCCNCAACCAGCNCCCGGAGACCCGCCGGAAACTTGTCGGAGACCGCATC
JMSF032P07+ TGGGTCATCATCCACAACCAGCACCCGGAGACCCGCCGGAAACTTGTCGGAGACCGCATC
                      ____________________________________________________________
consensus TGGGTCATCATCCACAACCAGCACCCGGAGACCCGCCGGAAACTTGTCGGAGACCGCATC
 
. : . : . : . : . : . :
JMFF050B02+ ACCGGACTTCCAAGAGGCGTTTGAGCACGTAGCCGACATCCCCTTTCCCACTTGACCACC
JMFF037C13+ NCCGGACTTCCAAGAGGCGTTTGAGCACGTAGCCGACATCCCCTTTCCCACTTGACCNCC
JMSF032P07+ NCCGGACTTCCAAGAGGCGTTTGAGCACGTAGCCGACATCCCCTTTCCCACTTGACCNCC
                      ____________________________________________________________
consensus ACCGGACTTCCAAGAGGCGTTTGAGCACGTAGCCGACATCCCCTTTCCCACTTGACCACC
 
. : . : . : . : . : . :
JMFF050B02+ ACCTAGATTCATTCTTTTTTTTTTCTTTTCTTTTCTCCCCTTCACTATTCAGCTCATATA
JMFF037C13+ NCCTAGATTCATTCTTTTTTTTTTCTTTTCTTTTCTCCCCTTCACTATTCAGCTCATATA
JMSF032P07+ ACCTAGATTCATTCTTTTTTTTTTCTTTTCTTTTCTCCCCTTCACTATTCAGCTCATATA
JMSF006N12+ TTCTCCCCTTCACTATTCAGCTCATATA
                      ____________________________________________________________
consensus ACCTAGATTCATTCTTTTTTTTTTCTTTTCTTTTCTCCCCTTCACTATTCAGCTCATATA
 
. : . : . : . : . : . :
JMFF050B02+ TAAATATACTACATCCAATTTATGGTAAGTACAAAATTAAGGTGAAATTGAGAAGTACCC
JMFF037C13+ TAAATATACTACATCCAATTTATGGTAAGTACAAAATTAAGG-GAAATTGAGAAGTACCC
JMSF032P07+ TAAATATACTACATCCAATTTATGGTAAGTACAAAATTAAGG-GAAATTGAGAAGTACCC
JMSF006N12+ TAAATATACTACATCCAATTTATGGTAAGTACAAAATTAAGG-GAAATTGAGAAGTACCC
                      ____________________________________________________________
consensus TAAATATACTACATCCAATTTATGGTAAGTACAAAATTAAGG-GAAATTGAGAAGTACCC
 
. : . : . : . : . : . :
JMFF050B02+ AAAAACAGAAATATCCCAAAATTCAAGCCTATGAATTTTCACATGCCCAAACTCATACCC
JMFF037C13+ AAAAACAGAAATATCCCAAAATTCAAGCCTATGAATTTTCACATGCCCAAACTCATACCC
JMSF032P07+ AAAAACAGAAATATCCCAAAATTCAAGCCTATGAATTTTCACATGCCCAAACTCATACCC
JMSF006N12+ AAAAACAGAAATATCCCAAAATTCAAGCCTATGAATTTTCACATGCCCAAACTCATACCC
                      ____________________________________________________________
consensus AAAAACAGAAATATCCCAAAATTCAAGCCTATGAATTTTCACATGCCCAAACTCATACCC
 
. : . : . : . : . : . :
JMFF050B02+ AGTTCCCAGAAATTCC
JMFF037C13+ AGTTCCCAGAAATTCC
JMSF032P07+ AGTTCCCAGAAATTCCAAGAAAACATCAAAGTAAGCGAAAGAAAAAGGCTTTTTGGGCTT
JMSF006N12+ AGTTCCCAGAAATTCCAAGAAAACATCAAAGTAAGCGAAAGAAAAAGGCTTTTTGGGCTT
                      ____________________________________________________________
consensus AGTTCCCAGAAATTCCAAGAAAACATCAAAGTAAGCGAAAGAAAAAGGCTTTTTGGGCTT
 
. : . : . : . : . : . :
JMSF032P07+ ATAGAGGAAGAAAAATGAAAGAGAGGCAGCAGAAGAGAAGTAATTATTTATACACTAATC
JMSF006N12+ ATAGAGGAAGAAAAATGAAAGAGAGGCAGCAGAAGAGAAGTAATTATTTATACACTAATC
                      ____________________________________________________________
consensus ATAGAGGAAGAAAAATGAAAGAGAGGCAGCAGAAGAGAAGTAATTATTTATACACTAATC