| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011I09 | Sequence | 550 | 011900 (5) | ref|XP_010246834.1| | 2e-102 | PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera] | 715 | 001060 (4) | ref|XP_009610301.1| | 3e-08 | PREDICTED: protein RRP45A-like isoform X2 [Nicotiana tomentosiformis] |
| JMFF031O20 | Sequence | 560 | 011900 (5) | ref|XP_010246834.1| | 3e-104 | PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera] | 714 | 001060 (4) | ref|XP_009610302.1| | 4e-08 | PREDICTED: protein RRP45A-like isoform X3 [Nicotiana tomentosiformis] |
| JMFF034H19 | Sequence | 549 | 011900 (5) | ref|XP_010246834.1| | 2e-101 | PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera] | 691 | 001060 (4) | ref|XP_009610302.1| | 1e-07 | PREDICTED: protein RRP45A-like isoform X3 [Nicotiana tomentosiformis] |
| JMFF040I22 | Sequence | 552 | 011900 (5) | ref|XP_010246834.1| | 4e-102 | PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera] | 719 | 001060 (4) | ref|XP_009610302.1| | 2e-08 | PREDICTED: protein RRP45A-like isoform X3 [Nicotiana tomentosiformis] |
| JMSF005K24 | Sequence | 360 | 011900 (5) | ref|XP_008777152.1| | 2e-48 | PREDICTED: protein RRP45A-like [Phoenix dactylifera] ref|XP_008777153.1| PREDICT | |||||
This contig is upended
. : . : . : . : . : . :
JMFF034H19+ GTGTACAATC
JMFF040I22+ CAAGTGTACAATC
JMFF011I09+ GTGTACAATC
____________________________________________________________
consensus CAAGTGTACAATC
. : . : . : . : . : . :
JMFF034H19+ AGGCCTCCGAAATGTTGAGAGAGCAGCTAAGGCTGCAATGTTGGCAGCATCAACAAGATT
JMFF031O20+ CGAAATGTTGAGAGAGCAGCTAAGGCTGCAATGTTGGCAGCATCAACAAGATT
JMFF040I22+ AGGCCTCCGAAATGTTGAGAGAGCAGCTAAGGCTGCAATGTTGGCAGCATCAACAAGATT
JMFF011I09+ AGGCCTCCGAAATGTTGAGAGAGCAGNTAAGGCTGCAATGTTGGCAGCATCAACAAGATT
____________________________________________________________
consensus AGGCCTCCGAAATGTTGAGAGAGCAGCTAAGGCTGCAATGTTGGCAGCATCAACAAGATT
. : . : . : . : . : . :
JMFF034H19+ CCCTCCATTGTCTAAAATTTGGAGATCAATACGGATAGACCAAACCCACTTCCCAGCTAC
JMFF031O20+ CCCTCCATTGTCTAAAATTTGGAGATCAATACGGATAGACCAAACCCACTTCCCAGCTAC
JMFF040I22+ CCCTCCATTGTCTAAAATTTGGAGATCAATACGGATAGACCAAACCCACTTCCCAGCTAC
JMFF011I09+ CCCTCCATTGTCTAAAATTTGGAGATCAATACGGATAGACCAAACCCACTTCCCAGCTAC
____________________________________________________________
consensus CCCTCCATTGTCTAAAATTTGGAGATCAATACGGATAGACCAAACCCACTTCCCAGCTAC
. : . : . : . : . : . :
JMFF034H19+ AACACAGAGAGATTCAGTGTCCACAGCTCTGCTTTCCCTTAGACCGCGATCAATTACGCG
JMFF031O20+ AACACAGAGAGATTCAGTGTCCACAGCTCTGCTTTCCCTTAGACCGCGATCAATTACGCG
JMFF040I22+ AACACAGAGAGATTCAGTGTCCACAGCTCTGCTTTCCCTTAGACCGCGATCAATTACGCG
JMFF011I09+ AACACAGAGAGATTCAGTGTCCACAGCTCTGCTTTCCCTTAGACCGCGATCAATTACGCG
JMSF005K24+ CGCG
____________________________________________________________
consensus AACACAGAGAGATTCAGTGTCCACAGCTCTGCTTTCCCTTAGACCGCGATCAATTACGCG
. : . : . : . : . : . :
JMFF034H19+ TCCCAACTCAATAGCAGACTCTCCAGGACGACCTGCCTCAAATGAAGGATCAGCCATAGG
JMFF031O20+ TCCCAACTCAATAGCAGACTCTCCAGGACGACCTGCCTCAAATGAAGGATCAGCCATAGG
JMFF040I22+ TCCCAACTCAATAGCAGACTCTCCAGGACGACCTGCCTCAAATGAAGGATCAGCCATAGG
JMFF011I09+ TCCCAACTCAATAGCAGACTCTCCAGGACGACCTGCCTCAAATGAAGGATCAGCCATAGG
JMSF005K24+ TCCCAACTCAATAGCAGACTCTCCAGGACGACCTGCCTCAAATGAAGGATCAGCCATAGG
____________________________________________________________
consensus TCCCAACTCAATAGCAGACTCTCCAGGACGACCTGCCTCAAATGAAGGATCAGCCATAGG
. : . : . : . : . : . :
JMFF034H19+ AGAAAACTCAGTATAGATTGCAAGGCTCCCCTCGTTTGGCCTGTCTCGATAAGGTTGCAC
JMFF031O20+ AGAAAACTCAGTATAGATTGCAAGGCTCCCCTCGTTTGGCCTGTCTCGATAAGGTTGCAC
JMFF040I22+ AGAAAACTCAGTATAGATTGCAAGGCTCCCCTCGTTTGGCCTGTCTCGATAAGGTTGCAC
JMFF011I09+ AGAAAACTCAGTATAGATTGCAAGGCTCCCCTCGTTTGGCCTGTCTCGATAAGGTTGCAC
JMSF005K24+ AGAAAACTCAGTATAGATTGCAAGGCTCCCCTCGTTTGGCCTGTCTCGATAAGGTTGCAC
____________________________________________________________
consensus AGAAAACTCAGTATAGATTGCAAGGCTCCCCTCGTTTGGCCTGTCTCGATAAGGTTGCAC
. : . : . : . : . : . :
JMFF034H19+ TAGTTGTGAAGACACAAAACCCATAACATGAGTTTGACCCAGCTGCACCTCTGATGAGCC
JMFF031O20+ TAGTTGTGAAGACACAAAACCCATAACATGAGTTTGACCCAGCTGCACCTCTGATGAGCC
JMFF040I22+ TAGTTGTGAAGACACAAAACCCATAACATGAGTTTGACCCAGCTGCACCTCTGATGAGCC
JMFF011I09+ TAGTTGTGAAGACACAAAACCCATAACATGAGTTTGACCCAGCTGCACCTCTGATGAGCC
JMSF005K24+ TAGTTGTGAAGACACAAAACCCATAACATGAGTTTGACCCAGCTGCACCTCTGATGAGCC
____________________________________________________________
consensus TAGTTGTGAAGACACAAAACCCATAACATGAGTTTGACCCAGCTGCACCTCTGATGAGCC
. : . : . : . : . : . :
JMFF034H19+ ATCTTCTCTACCAAACTTGATATTGAGCTTCCGGTAATCGAAAGGGCGCCGTCCGTCGAC
JMFF031O20+ ATCTTCTCTACCAAACTTGATATTGAGCTTCCGGTAATCGAAAGGGCGCCGTCCGTCGAC
JMFF040I22+ ATCTTCTCTACCAAACTTGATATTGAGCTTCCGGTAATCGAAAGGGCGCCGTCCGTCGAC
JMFF011I09+ ATCTTCTCTACCAAACTTGATATTGAGCTTCCGGTAATCGAAAGGGCGCCGTCCGTCGAC
JMSF005K24+ ATCTTCTC----AAACTTGATATTGAGCTTCCGGTAATCGAAAGGGCGCCGTCCGTCGAC
____________________________________________________________
consensus ATCTTCTCTACCAAACTTGATATTGAGCTTCCGGTAATCGAAAGGGCGCCGTCCGTCGAC
. : . : . : . : . : . :
JMFF034H19+ TCTGAGGTCGGAAAGCAATGCAGTTTCGATAAACTTCTTCTCATTCACAGTCATCCGCCA
JMFF031O20+ TCTGAGGTCGGAAAGCAATGCAGTTTCGATAAACTTCTTCTCATTCACAGTCATCCGCCA
JMFF040I22+ TCTGAGGTCGGAAAGCAATGCAGTTTCGATAAACTTCTTCTCATTCACAGTCATCCGCCA
JMFF011I09+ TCTGAGGTCGGAAAGCAATGCAGTTTCGATAAACTTCTTCTCATTCACAGTCATCCGCCA
JMSF005K24+ TCTGAGGTCGGAAAGCAATGCAGTTTCGATAAACTTCTTCTCATTCACAGTCATCCGCCA
____________________________________________________________
consensus TCTGAGGTCGGAAAGCAATGCAGTTTCGATAAACTTCTTCTCATTCACAGTCATCCGCCA
. : . : . : . : . : . :
JMFF034H19+ TGTATTAACCAATCTTTGCTCCATATTTGTCTGAAGGTGATCGATGGTGAAAGAAGCGC
JMFF031O20+ TGTATTAACCAATCTTTGCTCCATATTTGTCTGAAGGTGATCGATGGTGAAAGAAGCGC
JMFF040I22+ TGTATTAACCAATCTTTGCTCCATATTTGTCTGAAGGTGATCGATGGTGAAAGAAGCGC
JMFF011I09+ TGTATTAACCAATCTTTGCTCCATATTTGTCTGAAGGTGATCGATGGTGAAAGAAGCGC
JMSF005K24+ TGTATTAACCAATCTTTGCTCCATATTTGTCTGAAGGTGATCGATGGTGAAAGAAGCGCC
____________________________________________________________
consensus TGTATTAACCAATCTTTGCTCCATATTTGTCTGAAGGTGATCGATGGTGAAAGAAGCGCC