Contig 011887:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF004H20-                                               CATCAAATAAACTCAACCCNAAT
                      ____________________________________________________________
consensus                                                  CATCAAATAAACTCAACCCNAAT
 
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rJMSF004H20-          CCNACTTCGTATATTNCANGAANGGATANTACTATACAACCATAAAGCTTCTCACATAAG
JMFF028P18+                                                AACCATAAAGCTTCTCACATAAT
                      ____________________________________________________________
consensus             CCNACTTCGTATATTNCANGAANGGATANTACTATACAACCATAAAGCTTCTCACATAAT
 
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rJMSF004H20-          AGATCTCCNATAGGTCTATTCNTAATTTCTTCTCAACTTGNATTCATCTTGAATCCCTTT
JMFF028P18+           AAATCTCCAATAGGTCTATTCTTAATTTCTTCTCAACTTGAATTCATCTTGAATCCCTTT
                      ____________________________________________________________
consensus             AGATCTCCAATAGGTCTATTCTTAATTTCTTCTCAACTTGAATTCATCTTGAATCCCTTT
 
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rJMSF004H20-          ATCCATGTTCACCTTGTGTTATGCTAGGAGATCTACGAACCGTGCATCCCATGCTCTTGC
JMFF028P18+           ATCCATGTTCACCTTGTGTTATGCTAGGAGATCTACGAACCGTGCATCCCATGCTCTTGC
                      ____________________________________________________________
consensus             ATCCATGTTCACCTTGTGTTATGCTAGGAGATCTACGAACCGTGCATCCCATGCTCTTGC
 
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JMFF028P18+           AAGGGAAGCCGTTTCAGAGACAGGTCCTGGTGAGTGGTTAGATGTACCACCACATTATCT
                      ____________________________________________________________
consensus             AAGGGAAGCCGTTTCAGAGACAGGTCCTGGTGAGTGGTTAGATGTACCACCACATTATCT
 
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JMFF028P18+           TGTTGATGTTCTTGTTCAGATTTAATAAATTGAGTTCTCTGCCCTGCAATCCCGACAATC
JMSF004H18+                                 TAATAAATTGAGTTCTCTGCCCTGCAATCCCGACAATC
                      ____________________________________________________________
consensus             TGTTGATGTTCTTGTTCAGATTTAATAAATTGAGTTCTCTGCCCTGCAATCCCGACAATC
 
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JMFF028P18+           CCCCAAGTTGATAAACTCTTTTCGTTACACACCCTGTACTTGGATTACCTTTGTAAGTGT
JMSF004H18+           CCCCAAGTTGATAAACTCTTTTCGTTACACACCCTGTACTTGGATTACCTTTGTAAGTGT
                      ____________________________________________________________
consensus             CCCCAAGTTGATAAACTCTTTTCGTTACACACCCTGTACTTGGATTACCTTTGTAAGTGT
 
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JMFF028P18+           GCACAAGCTTTGATCTGGAGATGAACACTTTGAATTGATGGATAGAACTAACTCGTGGAA
JMSF004H18+           GCACAAGCTTTGATCTGGAGATGAACACTTTGAATTGATGGATAGAACTAACTCGTGGAA
                      ____________________________________________________________
consensus             GCACAAGCTTTGATCTGGAGATGAACACTTTGAATTGATGGATAGAACTAACTCGTGGAA
 
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JMFF028P18+           GCTAAGATTATAATTTGCCTCTGATCTAAGAGTGAATGGGCAGAGAAATGAATTTCAGAT
JMSF004H18+           GCTAAGATTATAATTTGCCTCTGATCTAAGAGTGAATGGGCAGAGAAATGAATTTCAGAT
                      ____________________________________________________________
consensus             GCTAAGATTATAATTTGCCTCTGATCTAAGAGTGAATGGGCAGAGAAATGAATTTCAGAT
 
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JMFF028P18+           CCAATATATATCTTTAAGAACACTGCAGATTTCTTGAAGTAGAAAAATAAGAGGAAAGAA
JMSF004H18+           CCAATATATATCTTTAAGAACACTGCAGATTTCTTGAAGTAGAAAAATAAGAGGAAAGAA
                      ____________________________________________________________
consensus             CCAATATATATCTTTAAGAACACTGCAGATTTCTTGAAGTAGAAAAATAAGAGGAAAGAA
 
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JMFF028P18+           ATGGATATAAGAT                                               
JMSF004H18+           ATGGATATCAGATAAAAAATGAGGGCGAGAAATTAAGGATTATATTTTATGAGATATTGA
                      ____________________________________________________________
consensus             ATGGATATCAGATAAAAAATGAGGGCGAGAAATTAAGGATTATATTTTATGAGATATTGA
 
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JMSF004H18+           TTTTTGGTGTTAAATGATTGAAGGGAAGACTTTAGAGGATAGAGGTCAATTGTATGGACC
                      ____________________________________________________________
consensus             TTTTTGGTGTTAAATGATTGAAGGGAAGACTTTAGAGGATAGAGGTCAATTGTATGGACC